Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_031058.1 Length=58566 Score E Sequences producing significant alignments: (Bits) Value seq17411 82.4 3e-11 >seq17411 Length=25938 Score = 82.4 bits (90), Expect = 3e-11 Identities = 185/273 (68%), Gaps = 4/273 (1%) Strand=Plus/Plus Query 31005 CCATGCACATGTGTCGCGCCTTAATGACCACACCGACGCCCTTGGCTTCCAGGTGCTCGA 31064 ||||||||||||| |||| || |||||| | |||||||||| || | | | | Sbjct 6750 CCATGCACATGTGCGTGGCCTCAACGACCACGGCCACGCCCTTGGGCTCAATGACGCCCA 6809 Query 31065 ACAGTGCGTCCGCGATCTGGTCTGTGAGCCGTTCCTGCACTTGCAGGCGGCGAGCATACA 31124 | |||| |||||||| | || || || |||||||| |||| ||||| | | | | Sbjct 6810 TGATGGCGTTGGCGATCTGCTTGGTCAGGCGCTCCTGCACCTGCAACCGGCGCGAAAAGA 6869 Query 31125 TGTCCGCCAGGCGGGACAGCTTGCTCAGGCCCACGATACGACCGTTCGGAATGTAGCTGA 31184 || || | || || || || || |||| | || || || ||||| | || Sbjct 6870 CCTCACTCACCCTGGCGAGTTTACTGAGCCCCAGCACTTTGCCATTGGGGATGTACCCGA 6929 Query 31185 TCGTG-ACCGTGCCGAAGATCGGCGCGAGGTGATGCTCGCA-ATGTGAGTAGATGGGGAT 31242 | ||| ||| |||| || |||| | | ||| |||||||| ||| ||||||| | || Sbjct 6930 T-GTGCACCTTGCCCGTGAACGGCACCATGTGGTGCTCGCACATG-GAGTAGAGGTCAAT 6987 Query 31243 GTCGCGCACCGTCACCATCTGGTCATGCTTCTC 31275 ||| ||||| | ||||||| ||| || | ||| Sbjct 6988 GTCCCGCACGATGACCATCTCGTCGTGGTCCTC 7020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187246157357888