Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_031074.1 Length=92580 Score E Sequences producing significant alignments: (Bits) Value seq17656 87.8 1e-12 >seq17656 Length=11375 Score = 87.8 bits (96), Expect = 1e-12 Identities = 130/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 1160 CGCCGGAACGTGGTATCCGCATGGAACGTCGGTGACCTCAGCGACATGGCACTTCACCCG 1219 ||||||| || | || || |||||| || || || | ||| ||||| || | ||| Sbjct 1040 CGCCGGATTGTTTTGTCTGCGTGGAACCCCGCCGATCTGAACGAGATGGCGCTGCCACCG 981 Query 1220 TGCCACATCATGTTCCAGCTGTACGTCGTCGACGGCCGGCTCTCGCTGC-AGGTCTACCA 1278 || ||||| | | |||| | ||||| | ||||| |||||| |||| || | ||||| Sbjct 980 TGTCACATGTTCTGCCAGTTCTACGTGGCGGACGGAGAGCTCTC-CTGCCAGATGTACCA 922 Query 1279 GCGCAGCGCGGACATGTTCCTCGGTGTGCCGTTCAATATCGCCTCGTACGCGCTCCTCGC 1338 |||| || |||||| ||||| ||||||||||| || || |||||||| ||| | Sbjct 921 GCGCTCAGCCGACATGGGACTCGGCGTGCCGTTCAACATTGCAAGCTACGCGCTGCTCAC 862 Query 1339 GC 1340 || Sbjct 861 GC 860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 296060703469233