Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq19195 188 1e-42 seq18510 179 8e-40 seq17350 140 7e-28 seq18987 120 6e-22 seq18578 105 1e-17 seq17703 96.9 7e-15 >seq19195 Length=70740 Score = 188 bits (208), Expect = 1e-42 Identities = 180/228 (79%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || |||||||| || || || || || | ||| || ||||||||||||||||| Sbjct 21579 CCGCCACGCAGACGCAGCACTAGGTGCAGCGTAGACTCCTTTTGGATGTTGTAGTCGCTT 21638 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||| ||||||||||| || |||||| || Sbjct 21639 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGGGGG 21698 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||||||||| || ||| || ||| | ||||| | |||||| | || || Sbjct 21699 ATGCCCTCCTTGTCTTGGATTTTCTGC-TTCACGTTGTCGATCGAGTCCGACGGCTCCAC 21757 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||||||||| |||||||| ||||| ||||| |||||||| Sbjct 21758 GTCGAGCGTGATCGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 21805 Score = 154 bits (170), Expect = 3e-32 Identities = 142/177 (80%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 282915 TGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAA 282974 |||||||||||||| ||||||||||| ||||| || || || ||||| ||||||||| Sbjct 22077 TGGATGTTGTAGTCGCTTAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAA 22136 Query 282975 CGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGAT 283033 || || |||||| || || ||||||||||||||||| || ||| || || | ||||| Sbjct 22137 CGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATTTTCTGC-TTCACATTGTCGAT 22195 Query 283034 AGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 | |||||| | || || ||||| ||||||||||| |||||||| ||||| ||||| Sbjct 22196 CGAGTCCGACGGCTCCACGTCGAGCGTGATCGTCTTGCCCGTCAACGTCTTCACGAA 22252 Score = 116 bits (128), Expect = 8e-21 Identities = 116/149 (78%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || ||||| || || ||||| || | ||| || || |||||||||||||| Sbjct 21807 CCGCCGCGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTT 21866 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||| ||||||||||| || |||||| || Sbjct 21867 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGGGGG 21926 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTT 283020 || ||||||||||||||||| || ||||| Sbjct 21927 ATGCCCTCCTTGTCTTGGATTTTCTGCTT 21955 >seq18510 Length=33167 Score = 179 bits (198), Expect = 8e-40 Identities = 180/231 (78%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || ||||| || ||||| || || |||||||||||||| Sbjct 31715 CCACCACGCAGACGCAGCACCAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGCTC 31656 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || || || ||||||| ||| || |||||| |||| Sbjct 31655 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGA 31596 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||| || ||||| ||||| || | || |||| |||||| | || || Sbjct 31595 ATGCCTTCCTTGTCCTGAATCTTCTGCTTC-ACATTGTCAATAGAGTCCGAGGGCTCCAC 31537 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||| ||||||||||| ||||||| ||||| ||||| |||||||| || Sbjct 31536 GTCGAGGGTGATCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATCTT 31486 Score = 174 bits (192), Expect = 3e-38 Identities = 177/228 (78%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || ||||| || ||||| || || |||||||||||||| Sbjct 31943 CCACCACGCAGACGCAGCACCAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGCTC 31884 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || || || ||||||| ||| || |||||| |||| Sbjct 31883 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGA 31824 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||| || ||||| ||| || || | || |||| |||||| | || || Sbjct 31823 ATGCCTTCCTTGTCCTGAATCTTCTGC-TTCACATTGTCAATAGAGTCCGAGGGCTCCAC 31765 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| ||||||| ||||| ||||| |||||||| Sbjct 31764 GTCGAGGGTGATTGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 31717 >seq17350 Length=35721 Score = 140 bits (154), Expect = 7e-28 Identities = 146/189 (77%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | ||||||||||| ||||| || || || ||||| |||||| Sbjct 6405 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 6464 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATC 283030 | || || |||||| ||| || ||||||||||| ||||| || ||| || ||| | || Sbjct 6465 AGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGC-TTGACGTTGTC 6523 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || |||| || | || || || || ||||| ||||| ||||||| ||||| || || Sbjct 6524 AATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 6583 Query 283091 TATCTGCAT 283099 |||||||| Sbjct 6584 GATCTGCAT 6592 >seq18987 Length=31229 Score = 120 bits (132), Expect = 6e-22 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| ||||| ||||| || | |||||| || || |||||||||||||| | Sbjct 18066 ACCACCACGCAGACGAAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGA 18007 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||| ||||| || || || ||||| ||||||| ||| || |||||| ||| Sbjct 18006 AAGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 17947 Query 282992 AATACC 282997 || || Sbjct 17946 GATTCC 17941 Score = 86.0 bits (94), Expect = 1e-11 Identities = 87/111 (78%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 282994 TACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||||| ||||| || ||||| || | || || ||||||| | || || Sbjct 17871 TACCCTCCTTGTCCTGGATTTTCTGCTTG-ACATTGTCAATGCTGTCCGACGGCTCCACG 17813 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 ||||| ||||| ||||| ||||| | ||||| ||||| |||||||||||| Sbjct 17812 TCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCATTTTC 17762 >seq18578 Length=55264 Score = 105 bits (116), Expect = 1e-17 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 316987 AGGTCATGCTCAACATATGCAGTTTTCAGAATATCCTTCGTC--GGGAACCCTTCCAACT 317044 |||| ||||| ||| | |||| ||||| || ||| | ||||| || || | || Sbjct 18602 AGGTTGTGCTCGACAAACACAGTCTTCAGCTCGTC--TCGGCTGGGGAAGCCCTCGAGCT 18659 Query 317045 GACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCATTGGGGCCGCAAAGAC 317104 | ||||| || || | |||||| |||||||| ||| ||| |||||||||||||||| Sbjct 18660 GGCCGTTGGAGATGGCGCGCATCAGCGTCGACTTACCACAACCGTTGGGGCCGCAAAGAC 18719 Query 317105 CATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGAAGAATCTTACCACCAT 317164 | || || | || ||| || || || | |||||| || |||||| ||||||| | Sbjct 18720 CGTAACGGTGGCCACGCTTGAGGCGAAGGCGAGCGTTGTTAAGCAGAATCATACCACCGT 18779 Query 317165 ATGCCAGAGAGAACTCACAATCACACAGGTC 317195 | || || |||||||| || | ||||| ||| Sbjct 18780 AGGCAAGCGAGAACTCGCAGTTACACAAGTC 18810 Score = 91.5 bits (100), Expect = 3e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 316162 TCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGA 316221 || ||||| ||||| || ||||||| ||||||||||| |||| ||| ||| || Sbjct 17786 TCCTTGTCCTCACCCGACTGGAAACGCCACTGGATGTACTGGTTGGCAGTCTCGTCGAGG 17845 Query 316222 TGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 316281 || ||| ||||||||||| |||||||| |||||||| || | |||||| || ||| Sbjct 17846 TGCGACTCAATGTGGTGGAATGCGTGCTGAGCCACGTAGGCGAAACGCATGGAAGGGTGC 17905 Query 316282 TTCCAAAC 316289 ||||| || Sbjct 17906 TTCCACAC 17913 >seq17703 Length=31908 Score = 96.9 bits (106), Expect = 7e-15 Identities = 236/358 (66%), Gaps = 0/358 (0%) Strand=Plus/Minus Query 273619 TAGACCAACCGGTGCCAATACCGGAAGAACCATTCACCAGAATACTCGGGATAATTGGGA 273678 |||||||||| || || ||||| | ||||| || |||| ||||||||| |||| Sbjct 6212 TAGACCAACCTGTTCCGATACCATCACTGCCATTGACAAGAACCATCGGGATAACCGGGA 6153 Query 273679 CATAATATTCGGGCTCAATTTTATCACCATCGTCGTAAAGGTACTTCAACAAAGCATCAT 273738 ||| |||| ||||| ||| | || || || | || ||||||| || | | || Sbjct 6152 TATACCATTCCGGCTCGATTGACTGGCCGTCTTCATCCAGATACTTCAGCACGTCGTTAT 6093 Query 273739 CCGTATCAACGAAAACCTTTCGCGTCTGAGGATTCAGTTTCGTGAAAATGTACCTGGCAC 273798 || | || ||| |||||| | | | || |||||||||||||| | || | Sbjct 6092 CCAGCGGATCGTAAATAAGTCGCGTGAGCTGCTCCAAGTTCGTGAAAATGTAACGAGCGC 6033 Query 273799 TCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACCCTCGGGCAGTAGCCAGT 273858 | || |||||||| || || | || |||||||||||| ||| ||| | Sbjct 6032 TGGCGGCATCCTTGCCGCCCATTAGACGCGTACCAAACTGACCGATAGGCGACAGCAGAT 5973 Query 273859 TTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGGGATA 273918 | ||||| ||||| ||| |||| || ||||| ||||||||| ||||| | Sbjct 5972 GAACATTGTTACTACCAACGAAATCTTGCGCCATGTTCACGATACAGCCCTGCAAACTCT 5913 Query 273919 CCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACCACTGAACTGAGCAACCTT 273976 || |||||||| || || ||| || | | |||||| || ||||||||||| Sbjct 5912 GTTCACCGTGGTGGTACGCAGAGTGCTCCGACACGTAACCAGCCAATTGAGCAACCTT 5855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046477236178582