Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq19195 149 5e-31 seq18510 147 2e-30 seq17350 132 3e-26 seq18987 102 6e-17 >seq19195 Length=70740 Score = 149 bits (164), Expect = 5e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 44109 TTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG 44168 |||| || | ||| | || ||| ||||| ||||| |||||||||||||||||| ||| Sbjct 21577 TTCCGCCACGCAGACGCAGCACTAGGTGCAGCGTAGACTCCTTTTGGATGTTGTAGTCGC 21636 Query 44169 CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228 || ||| |||| ||||||||||| ||||| ||||||||||||||||| || | | Sbjct 21637 TTAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGGG 21696 Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | | || ||||| || || |||||||||| | | || | ||| | | |||| Sbjct 21697 GGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCA 21756 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || | ||| |||||||| ||||| | |||||||||||||| |||||| Sbjct 21757 CGTCGAGCGTGATCGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 21806 Score = 109 bits (120), Expect = 4e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||||||| ||||| |||||| ||||||||||| || Sbjct 21803 CATGCCGCCGCGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTC 21862 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| |||| ||||||||||| ||||| ||||||||||||||||| || | Sbjct 21863 GCTTAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGG 21922 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCA 44261 || | || ||||| || || |||||||||| Sbjct 21923 GGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCA 21957 Score = 109 bits (120), Expect = 4e-19 Identities = 131/178 (74%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 44153 TGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAA 44212 ||||||||||| ||| || ||| |||| ||||||||||| ||||| ||||||||| Sbjct 22077 TGGATGTTGTAGTCGCTTAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAA 22136 Query 44213 CGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATG 44272 |||||||| || | || | || ||||| || || |||||||||| | | || Sbjct 22137 CGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATC 22196 Query 44273 GTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGA 44330 | ||| | | ||||| || | ||| |||||||| ||||| | ||||||||||||| Sbjct 22197 GAGTCCGACGGCTCCACGTCGAGCGTGATCGTCTTGCCCGTCAACGTCTTCACGAAGA 22254 >seq18510 Length=33167 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||||||| | ||| |||||| ||||||||||| || Sbjct 31719 CATGCCACCACGCAGACGCAGCACCAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTC 31660 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| |||| ||||||||||| || || ||||||| ||||||||| || | Sbjct 31659 GCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGG 31600 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| ||| ||||||||||||| | | || | ||| | || || Sbjct 31599 CGGAATGCCTTCCTTGTCCTGAATCTTCTGCTTCACATTGTCAATAGAGTCCGAGGGCTC 31540 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || | || |||||||| ||||| || ||||| |||||||| ||||| Sbjct 31539 CACGTCGAGGGTGATCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 31489 Score = 141 bits (156), Expect = 7e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||||||||| | ||| |||||| ||||||||||| ||| Sbjct 31943 CCACCACGCAGACGCAGCACCAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGCTC 31884 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| |||| ||||||||||| || || ||||||| ||||||||| || | || Sbjct 31883 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGA 31824 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | |||||||| ||| ||||||||||||| | | || | ||| | || ||||| Sbjct 31823 ATGCCTTCCTTGTCCTGAATCTTCTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACG 31764 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || | || || ||||| ||||| || ||||| |||||||| |||||| Sbjct 31763 TCGAGGGTGATTGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATG 31716 >seq17350 Length=35721 Score = 132 bits (146), Expect = 3e-26 Identities = 145/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| || | ||| ||| |||| || |||||||| ||||| |||| Sbjct 6403 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 6462 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC 44267 ||| |||||||| || | || | || ||||| ||| || |||||||| | | Sbjct 6463 TCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACGTTGT 6522 Query 44268 CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGA 44327 | ||| |||||| | ||||| |||| ||| || ||||| ||||| ||||||||||| | Sbjct 6523 CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 6582 Query 44328 AGATTTGCATGAT 44340 |||| |||||||| Sbjct 6583 AGATCTGCATGAT 6595 >seq18987 Length=31229 Score = 102 bits (112), Expect = 6e-17 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| |||||||||||||| ||||||||||| || | || ||| |||| || Sbjct 18048 CACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTC 17989 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||||||||| ||||| ||||||| ||||||||| || Sbjct 17988 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTC 17953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359904701247861