Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq18510 129 1e-24 seq19195 123 6e-23 seq17350 118 3e-21 >seq18510 Length=33167 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || |||||||||||||| ||||| ||| ||| Sbjct 31492 CAGATCTTCGTCAAGACGCTGACGGGCAAGACGATCACCCTCGACGTGGAGCCCTCGGAC 31551 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || || || || || |||||||||||||| ||||| || || || |||||||| Sbjct 31552 TCTATTGACAATGTGAAGCAGAAGATTCAGGACAAGGAAGGCATTCCGCCTGACCAGCAG 31611 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| || || || | || || ||| || ||| || Sbjct 31612 CGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAACATC 31671 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || |||| || || Sbjct 31672 CAGAAGGAGTCGACGTTGCACCTGGT 31697 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || || ||||||||||| ||||| ||| ||| Sbjct 31720 CAGATCTTCGTCAAGACGCTGACGGGCAAGACAATCACCCTCGACGTGGAGCCCTCGGAC 31779 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || || || || || |||||||||||||| ||||| || || || |||||||| Sbjct 31780 TCTATTGACAATGTGAAGCAGAAGATTCAGGACAAGGAAGGCATTCCGCCTGACCAGCAG 31839 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| || || || | || || ||| || ||| || Sbjct 31840 CGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAACATC 31899 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || |||| || || Sbjct 31900 CAGAAGGAGTCGACGTTGCACCTGGT 31925 >seq19195 Length=70740 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || | || || || |||||||| ||||| ||||| || ||| Sbjct 21802 CAGATCTTCGTGAAGACGTTGACGGGCAAGACGATCACGCTCGACGTGGAGCCGTCGGAC 21743 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || || || || ||||| || || ||||| || |||||||| Sbjct 21742 TCGATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCCCCTGACCAGCAG 21683 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| || ||||| || || || | || || ||| || ||| || Sbjct 21682 CGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTAAGCGACTACAACATC 21623 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| || || || ||||| || || Sbjct 21622 CAAAAGGAGTCTACGCTGCACCTAGT 21597 Score = 102 bits (112), Expect = 2e-16 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 |||||||| || | || || || |||||||| ||||| ||||| || ||| | ||| Sbjct 22252 TTCGTGAAGACGTTGACGGGCAAGACGATCACGCTCGACGTGGAGCCGTCGGACTCGATC 22193 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || || || || || || || ||||| || || ||||| || |||||||| || | Sbjct 22192 GACAATGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCCCCTGACCAGCAGCGTTTG 22133 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCA 178105 ||||||||||| || ||||| || || || | || || ||| || ||| |||| Sbjct 22132 ATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTAAGCGACTACAACATCCA 22077 >seq17350 Length=35721 Score = 118 bits (130), Expect = 3e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || || || || ||||| || || ||||| || ||| Sbjct 6589 CAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCCGAC 6530 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||| || |||||||| || || || |||||||| || || ||||| || |||||||| Sbjct 6529 AGCATTGACAACGTCAAGCAGAAAATCCAGGACAAGGAGGGCATCCCGCCTGACCAGCAG 6470 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| || || | || || | || || ||| || Sbjct 6469 CGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAACATC 6410 Query 178104 CAAAA 178108 || || Sbjct 6409 CAGAA 6405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203429946330402