Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1329 136 8e-27 >seq1329 Length=147112 Score = 136 bits (150), Expect = 8e-27 Identities = 665/1043 (64%), Gaps = 49/1043 (5%) Strand=Plus/Minus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||| |||||||| ||||||| ||||| |||||||||| ||| ||| || Sbjct 131615 CTCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTCTCGTCGAG 131556 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 || ||| |||||||||||||| ||||| |||||||| || | |||||| || || Sbjct 131555 GTGCGACTCAATGTGGTGGAAAGCGTGCTGAGCCACGTAGGCGAAACGCATGGAAGGGTG 131496 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 |||||| || |||| | || | |||| | ||||| |||| ||| || || || Sbjct 131495 CTTCCACACCTGACCGCTCGTCGGCTCCACCTCACCCGTCAGCATCTTGATCAGCGTCGA 131436 Query 319170 TTTCCCCGCACCGTTTTCGCCCACCACACCGATCCTG-------GAGTTCAGCGATACCT 319222 || || |||||||| ||| | |||| |||| | | ||| || || ||| Sbjct 131435 CTTACCGGCACCGTTGGGGCCAAGCACAGCGATACGGCTCGACAGAGCGCA-CGTCACCG 131377 Query 319223 GGGCATTCACGTTG-TCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCG 319281 | || |||| || | | | || ||||| || |||| | | | || Sbjct 131376 AGATGTT---GTTGATCGACG----GCTTCGGGGTACCAGGGTACTGGTA-CGAGCAGTT 131325 Query 319282 CGT-AGCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGG 319340 || || ||||||| |||| |||| | | ||||| || ||||| || Sbjct 131324 GGTCAGACGAATGATGGGCTTACCCTTGTTCTTGATGTCAGCAAGGAAACCAGGCTCCGG 131265 Query 319341 GAAC-----TTCCACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGA 319395 |||| | ||||| ||| || ||| || ||||||| | | ||||| Sbjct 131264 GAACGTGAACTTCACGTTGTC--CGACTC---CAGCTCGTAGTAGGCCTTGGCCTCGGGC 131210 Query 319396 CGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCG 319455 || || ||||| || || || |||||||| |||||||||| || | ||| Sbjct 131209 TTCTGCTCAACGAAGAGAGAAAGGTTGCCCTTGTAGATCTTCAGCTTACGG---GTCTCG 131153 Query 319456 TAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACG 319515 || ||||| || ||| || || ||| ||||| || |||||||| ||||| || | | Sbjct 131152 TAGTGGATGATGTTGGTACACACGTTGTCAAGGAAGCCAGAGTCGTGGGACACCATGATG 131093 Query 319516 CACGAAAC-GTCCTTAAGGTTGATCAGGTA-TTCAATCAA-CCACCTCACGTTAGACACA 319572 | | || ||| | | | | ||||||| ||| |||| ||| ||||| ||| Sbjct 131092 GAGGTGACAGTCGGCACGCTCG-TCAGGTAGTTC--TCAAGCCAGGCGACGTTCTTGACA 131036 Query 319573 GAAAGATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGT 319632 | ||||| |||||||| ||||| ||||| | | || ||||| ||||| ||||| Sbjct 131035 TCCAAGTGGTTTGTCGGCTCATCAAGCAGCAGAATGTCAGCCTTCAGCAGCATAGCACGC 130976 Query 319633 GCAAGAGCGAGTTTCATTTTCCACCCTCCGGAAAGAGTGTTAATTGGGGCAGATTGGCGC 319692 | || |||||||||| ||||| || || ||||| | | | | || || | Sbjct 130975 GACAGCTCGAGTTTCATCTTCCAACCACCAGAAAGGGAGCCCACAGCCTGAGCCTGCATC 130916 Query 319693 TCAATATCAAAGCCAACCGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGTTT 319752 || ||||| || | |||| | | || | |||| | | Sbjct 130915 TCGGCGGTGAAGCCGACATCAGCCAGAGCGTCCTCAACCTCCTTGCGAG------GGGTG 130862 Query 319753 TCCTTTACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCGT---GTTAGAATCGGAC 319809 ||||| | | |||||| | |||||||||| | |||| | || || || Sbjct 130861 TCCTTCAGGTCGTCATCAATCAGGATGAAGTCAACCA---CCGTAAGCTCAGCCTCCGAA 130805 Query 319810 CCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCTTCA 319869 | | || | ||| || ||| | |||| |||| | ||| |||||| || || Sbjct 130804 GCCTGCAGGTTGTGCTCGACGAACACAGTCTTCAGCTCGTCCTTGCTGGGGAAGCCCTCG 130745 Query 319870 AGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCACAC 319929 ||||||||||| |||| ||||||||||| || || ||||| ||||| || || ||| Sbjct 130744 AGCTGGCCGTTGGCAATGGCGCGCATCAGCGTCGACTTACCACAACCGTTGGGACCGCAC 130685 Query 319930 AGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTCCA 319989 |||||||| |||| || || || ||| | || | ||||||||| ||||| | ||| Sbjct 130684 AGACCGTAACGGTGGCCACGCTTGAGGCGAAGACGGGCGTTGTTCAGCAGAATCATACCA 130625 Query 319990 CCATATGCCAGAGAAAATTCACA 320012 || || || || || || || || Sbjct 130624 CCGTAAGCGAGCGAGAACTCGCA 130602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057802097754080