Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1029 143 3e-29 >seq1029 Length=318196 Score = 143 bits (158), Expect = 3e-29 Identities = 311/458 (68%), Gaps = 8/458 (2%) Strand=Plus/Minus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 |||| || || ||||| || || | |||||||| | |||||| || ||||| || | Sbjct 189416 ACATGAGGCACGCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGA 189357 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | ||| || ||| | || || ||||| | ||| || |||| | |||||| || | Sbjct 189356 AGCTCAGGCCAGGCGTGAGGCCGCGCTTCTTGAGCCAGAAGATCGAGCAGAACGAGCCCG 189297 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 | ||||| || ||||| |||| ||| |||| | | || || | ||||| || || Sbjct 189296 AGAAGAAGATGCCCTCCACGGTTGCGAACGTCAGCACGCGCTCCGGGTACGACGACACTC 189237 Query 17136 T-GTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT 17194 | || | ||| || || |||| | ||||| | ||| | || ||||| || Sbjct 189236 GCGGGTCGCA-CCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGAATCGTATCG 189178 Query 17195 ATGGCCTTAAATAATTTCTCTTTTTCCTGTAGG-TCGATTATATACGTATCGATGAGTAG 17253 ||||| | | | || || ||| || | || | || ||||| || ||||| || Sbjct 189177 ATGGCACGCAGCAGGTGGTCCTTCTCC-GTCGCATCCTTGATGTACGTGTCAATGAGCAG 189119 Query 17254 GCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGC 17313 |||| || ||||| |||||||| ||||| ||||| || ||||| ||||| ||||| Sbjct 189118 CGAATACACCTCTGAGTGGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCAGCGGGC 189059 Query 17314 TTCCGCTATTTGAACTTCCACGTAGAATCGTTCC--GCTAGATTTTCGTTCACGATGCCG 17371 |||| || || ||||| | ||| |||| || || || ||||||||||||||| Sbjct 189058 CTCCGGTACCTGCACTTCATTGCTGAA--GTTCATGGCCAGGTTCTCGTTCACGATGCCG 189001 Query 17372 TCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 ||||| || ||||| || |||| | ||||| ||||| Sbjct 189000 TCGCTGGCAGCGAAGAAGGCCAGCACGTGCTTGATGAA 188963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517535145578880