Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1029 138 1e-27 >seq1029 Length=318196 Score = 138 bits (152), Expect = 1e-27 Identities = 312/459 (68%), Gaps = 10/459 (2%) Strand=Plus/Minus Query 16194 ACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAA 16253 |||| || ||||||||||| || | || ||||| | |||||| || ||||| || | Sbjct 189416 ACATGAGGCACGCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGA 189357 Query 16254 AAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCC 16312 | | | || ||| | || || ||||| | |||||| |||| |||| || || ||| Sbjct 189356 AGCTCAGGCCAGGCGTGAGGCCGCGCTTCTTGAGCCAGAAGATCG-AGCAGAACGAGCCC 189298 Query 16313 GAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAG-CA-T 16370 || ||||| || ||||| || | ||| || | | | || |||| ||||| | || | Sbjct 189297 GAGAAGAAGATGCCCTCCACGGTTGCGAACGTCAGCACGCGCTCCGGGTACGACGACACT 189238 Query 16371 CTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTT 16430 | | || | ||| || | |||| | ||||| | || | ||| ||||| | Sbjct 189237 CGCGGGT-CGCA-CCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGAATCGTAT 189180 Query 16431 CTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTA 16490 | ||||| | || | || || ||| ||| | || ||||| ||||| || | Sbjct 189179 CGATGGCACGCAGCAGGTGGTCCTTCTCCGTCGCATCCTTGATGTACGTGTCAATGAGCA 189120 Query 16491 AACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAG 16550 |||| |||||||| |||||||| ||||| ||||| || || |||||||| || | Sbjct 189119 GCGAATACACCTCTGAGTGGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCAGCGGG 189060 Query 16551 CCTCCGCTATTTGTACTTCCACGTAAAATCGTTCC--GCCAGGTTCTCATTCACGATACC 16608 |||||| || || ||||| | || |||| ||||||||||| |||||||| || Sbjct 189059 CCTCCGGTACCTGCACTTCATTGCTGAA--GTTCATGGCCAGGTTCTCGTTCACGATGCC 189002 Query 16609 GTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 ||| || ||||| || || |||| | |||||| ||||| Sbjct 189001 GTCGCTGGCAGCGAAGAAGGCCAGCACGTGCTTGATGAA 188963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511404069429120