Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq191 224 1e-53 >seq191 Length=126180 Score = 224 bits (248), Expect = 1e-53 Identities = 484/712 (68%), Gaps = 19/712 (3%) Strand=Plus/Plus Query 145684 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCG 145743 || ||||| || ||||| || || ||||| || || || | ||||||| || || || Sbjct 33248 AGCGGCTCGACATGGTTAAGATACACGTGGGCATCACCAATAACGTGGACAAACTCGCCA 33307 Query 145744 GGCTCGAGGCCCGTGAGGTGGGCGACCATGTAG-GTCAGCAGGGAGTAGCTGGCTATGTT 145802 |||| || || | | || || | || || | || |||| | ||||||||| ||||| Sbjct 33308 GGCTTCAGTCCACTCACCTGTGCTATCA-GTCGCGTAAGCAACGCGTAGCTGGCGATGTT 33366 Query 145803 GAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCC 145862 ||| ||||| || || |||||||| ||||||||||||||| ||||||||| | ||| || Sbjct 33367 GAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAGGACAACTCGCC 33426 Query 145863 GCCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTC 145922 | | ||||||||||||||||| | | ||| || ||||| || ||||| | || || Sbjct 33427 GTCGGCCACGTAGAACTGGCAGAACATGTGACACGGCGGGAGCGCCATCTCATTGAGATC 33486 Query 145923 CGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTG-CTCTCGGGGTTCCTCTTGATCTCCC 145981 |||||| ||||| || | || |||| || | | | || || || | | || Sbjct 33487 CGCCGGATTCCACGCCGACAGCACGATCCGACGGTCGGTC-GGATTTGTGCGCAGCTTGT 33545 Query 145982 CTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGA-GTCCACG 146040 | |||| || |||||||||||||||||| || ||| || | | || | |||| | Sbjct 33546 CAATCACCTCAGCGAGCTGGTCCACGCCCTGACCAGTGTAGTC-GGCGTGCATGTCCGTG 33604 Query 146041 TACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCC 146100 ||| || || || || | ||||||||| |||||||| || || ||||| || ||| Sbjct 33605 TACTTTGCTCCAAAATGACGCCACTGGAAGCCGTAGACCGGTCCGAGGTCGCCAACTTCC 33664 Query 146101 CTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTG 146160 | | ||| || | | | || | ||||| || || ||| |||||||||| | | Sbjct 33665 CGCGACTGCAGTCCTCGACTGTCCAGATACTCCCGCGATCCATTGCCGTCCCAGATGTGG 33724 Query 146161 ACGCCCCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCT 146220 | || || | ||| | | |||| || ||||||||||| |||||||| Sbjct 33725 ATATCCTTCTCCTGCAGCGTGTGCGCACTCGTGTCGCCACTGATGAACCACAGCAGCTCC 33784 Query 146221 TCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGAAC---TGGCCCCGC 146277 || || || | ||||||||| | |||||| || |||| ||||||| | ||||| | Sbjct 33785 TCCGCCACGCCGCGCCAGAAGACGCGCTTGGTCGTGAGCAAGGGGAACACGTTGCCCCTC 33844 Query 146278 AG---GGAGTACTTGGCCTGGTCCCCGAAGACGGACAGGGTGCCCACGCCCGTCC--TGT 146332 || | || | | ||| | |||||||| ||||| || || ||||| | | | Sbjct 33845 AGACTGAAGCGCAT---CTGCGCTCCGAAGACCGACAGCGTCCCTGTTCCCGTGCGATCT 33901 Query 146333 CCCCCCTGCGCACCCCGTTCGCCAGGATCTCCCTGACGGTGTTGAGGTACTG 146384 || | || || | || | | |||||||| || || || ||||||||| Sbjct 33902 CCGCGCTTCG--CTCCTTGGGTCAGGATCTTCCGGATCAAGTCGAGGTACTG 33951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590064880448640