Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq868 82.4 6e-11 seq147 82.4 6e-11 >seq868 Length=80962 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| |||| ||| |||||| || ||||| ||||||| Sbjct 33827 CCACCACGCAGACGAAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAA 33886 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTC 21061 ||||| || ||||||||||||| ||||| || | || || | ||||||||| Sbjct 33887 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 33939 >seq147 Length=128699 Score = 82.4 bits (90), Expect = 6e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 20986 CCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAA 21045 |||| || ||||| ||||||| || || || ||||||| ||||| ||||| || | | Sbjct 64796 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 64855 Query 21046 TAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGC 21105 | || | ||||||||| || | ||| |||||||| ||| || || || || | | Sbjct 64856 TCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 64915 Query 21106 CGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAA 21165 | | | || |||||| |||| || ||||||||||| || | || || |||| Sbjct 64916 CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 64975 Query 21166 ATATTTGCAT 21175 | || ||||| Sbjct 64976 AGATCTGCAT 64985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422250883605056