Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1029 372 3e-98 seq784 145 8e-30 seq147 136 4e-27 seq868 107 2e-18 >seq1029 Length=318196 Score = 372 bits (412), Expect = 3e-98 Identities = 585/828 (71%), Gaps = 12/828 (1%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||| | ||| ||||||||| |||||||||| | ||||| || || | | ||| Sbjct 188795 GAGCCGTTCCTGGTCGAGAACCCGAACCGGTTCGTGCTGTTCCCGATCCAGGAGCACGAC 188854 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 |||||| |||||||| || || ||||| ||||||||||| | ||||||| |||||||| Sbjct 188855 GTGTGGCAGATGTACAAGAAAGCGGAGGCCTCGTTCTGGACGGCCGAGGAGCTGGACCTG 188914 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755 | ||| || ||||||| | | ||| ||||||||||| |||||||||||| Sbjct 188915 GTGCACGACCTGAAGGACTGGGCGAACCTGACGGACAACGAGCGGTTCTTCATCAAGCAC 188974 Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC 116815 ||||||||||| ||||| ||||||||||||||||| |||||||| |||| | | ||| Sbjct 188975 GTGCTGGCCTTCTTCGCTGCCAGCGACGGCATCGTGAACGAGAACCTGGCCATGAACTTC 189034 Query 116816 GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAG 116875 | || |||||||| | ||||| || ||||||||||| || ||||||||||| ||| Sbjct 189035 AGCAATGAAGTGCAGGTACCGGAGGCCCGCTGCTTCTACGGTTTCCAGATCGCCATCGAG 189094 Query 116876 AACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAG 116935 ||| | ||||| || |||||||| ||||| ||||||||| | | || |||| Sbjct 189095 AACATCCACTCAGAGGTGTATTCGCTGCTCATTGACACGTACATCAAGGATGCGACGGAG 189154 Query 116936 AAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGG 116995 ||| || || || |||||||| ||||| ||||| || || |||| || | ||| Sbjct 189155 AAGGACCACCTGCTGCGTGCCATCGATACGATTCCGTGTGTGAAGAAGAAAGCGCACTGG 189214 Query 116996 GCGCTGCGCTGGATCG-CCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGC 117054 ||||| ||| || || || ||| | | | | | |||||| || || | ||||| Sbjct 189215 GCGCTCAAGTGGTGCGACCCGC-GAGTGTCGTCGTACCCGGAGCGCGTGCTGACGTTCGC 189273 Query 117055 GGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACG 117114 |||| |||||| ||||||| |||||| ||| | | || || ||||||||||| || Sbjct 189274 AACCGTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGCTCGATCTTCTGGCTCAAGAAGCG 189333 Query 117115 CGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCA 117174 |||||||| ||| ||||||| ||| |||||||| ||| | | |||||||| |||| Sbjct 189334 CGGCCTCACGCCTGGCCTGAGCTTCTCGAACGAGCTGATCAGCCGTGACGAGGGCATGCA 189393 Query 117175 TTGCGACTTTGCCTGTTTGCTG---TTCAAGCATTTGGTGCAGCGACCGAGCGCGGCG-C 117230 ||||| || || | || | ||||| ||||| | | | | || || | | Sbjct 189394 CACGGACTTCGCGTGCCTCATGTACTCCAAGC---TGGTG-AACAAGCTGCCGGGGAGCC 189449 Query 117231 GCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGC 117290 |||| |||||||| ||||| ||| | |||||||| ||| | || ||| Sbjct 189450 GCGTGCACGAGATCGTGCGCGACGGGGTGACGATCGAGCACGAGTTCGTGCGTGACTCGC 189509 Query 117291 TGCCGGT-GCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTC 117349 | || || | ||| | | || | || | | |||| ||||||||||||||||| Sbjct 189510 TCCCTGTGGAGTC-GATCGGCATGAACTCGGCGCTCATGTGCCAATACATCGAGTTCGTG 189568 Query 117350 GCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACG 117397 |||||| | |||||| | ||||| | | ||| ||||||| || Sbjct 189569 GCCGACCGTCTGCTGTGCTCGCTGGGTGTGTCGAAGATCTACAACGCG 189616 >seq784 Length=83642 Score = 145 bits (160), Expect = 8e-30 Identities = 164/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| |||||||| || ||||| | ||||| || | | Sbjct 19012 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 18953 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| ||||| | || || | ||||| ||||||||||| | ||||| Sbjct 18952 GACTCGATCGACAACG-TCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCA 18894 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| ||||| || |||| ||||| || | ||||||||| Sbjct 18893 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAA 18834 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||| ||||||||| | |||||||| || ||| ||||| Sbjct 18833 CATTCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGC 18797 >seq147 Length=128699 Score = 136 bits (150), Expect = 4e-27 Identities = 144/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || |||||||| |||||||| | ||||| || | || Sbjct 64985 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 64926 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||||| | | | ||||| | ||||| | ||||| ||||||||||| | |||||| Sbjct 64925 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 64866 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||||| || |||| ||||| ||| ||||||||| Sbjct 64865 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAAC 64806 Query 40870 ATCCAGAAGG 40879 |||||||||| Sbjct 64805 ATCCAGAAGG 64796 >seq868 Length=80962 Score = 107 bits (118), Expect = 2e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || |||||| | |||||||| || || |||| ||| ||||| |||||||| |||| ||| Sbjct 33951 GGAATCCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 33892 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| ||||||||||||||||||||| ||||||||| || ||| | || || | Sbjct 33891 ACCCTTTCGGACTACAACATCCAGAAGGAGAGCACGCTGCACCTGGTGCTTCGTCTGCGT 33832 Query 40912 GGCGGCGGC 40920 || || ||| Sbjct 33831 GGTGGTGGC 33823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515208792572160