Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq926 174 3e-38 seq1284 116 8e-21 seq859 91.5 3e-13 seq1029 87.8 4e-12 >seq926 Length=67561 Score = 174 bits (192), Expect = 3e-38 Identities = 857/1355 (63%), Gaps = 63/1355 (5%) Strand=Plus/Plus Query 248419 ATGTACATCACCAAGCGGGACGGGCGCAAAGAAAACGTTCTCTTCGACAAAATCTCGGCG 248478 |||||| ||| |||||| |||||||| | || |||| |||||||| || ||||| Sbjct 29776 ATGTACGTCATCAAGCGCGACGGGCGTCAGGAGGACGTCAAGTTCGACAAGATTACGGCG 29835 Query 248479 CGCATCAAGAAGCTCTGTTATGGTCTGGAACCCAACTTCGTCGAT--CATGTGGCCATCG 248536 ||||||| |||||||| || || || | || ||| ||| || ||| | ||| Sbjct 29836 CGCATCACCAAGCTCTGCTACGGGCTCAACCCGGACTACGTGGACGCCATCAAG--ATCT 29893 Query 248537 CCCAGAAAGTTATTTCGGGCGTCTACACCGGAGTAACAACGACAGAACTGGACACCTTAG 248596 ||||||| || | ||||||| ||| |||| ||||| || | ||| | ||| | | Sbjct 29894 CCCAGAAGGTCGTGGCGGGCGTGTACCCCGGCGTAACCACCTCGGAATTAGACGAACTCG 29953 Query 248597 CTGCGGAGACGGCGGCGTACATGGCGATTGCACACCCCGACTACTCGCTGCTGGCCGGGA 248656 | || ||||| || || | | | | | ||||| || | ||| ||||| | | Sbjct 29954 CGGCCGAGACCGCCGCCTGCCAGAGCACTCAGCACCCGGATTTCTCTAAACTGGCGGCAA 30013 Query 248657 GGATCGCCGTCTCAAGGCTTCACAAAGAAACGAAAGAGTCGTTCGTCGAAACCATGGCTG 248716 | ||||||||||| | || ||||| | || || || ||| ||| | ||| | | Sbjct 30014 GAATCGCCGTCTCTAACCTGCACAAGAACACCAACAAGGTGTTTAGCGACAACATCGAGG 30073 Query 248717 --------------ACCTACATGCCTATGGG-----ATGG--------TCGCCGATGACG 248749 ||| || | | ||| ||| |||| ||||||| Sbjct 30074 TTTTTCACAAGAACACCCACGAGAAGACGGGTGCAGATGCGCCCCTCATCGCTGATGACG 30133 Query 248750 TCCAC---ACCGTCATTCAGGACAACGCGCACCTCCTGGACGGCGCGATTGACTACGGCA 248806 | || | |||||| ||| |||| | || ||| || || || | ||| | Sbjct 30134 TATACGAGATCGTCATGCAGCACAAGG---ACGAGCTGAACTCGGCCATCATCCACGACC 30190 Query 248807 AAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAA 248866 || || || ||||| | ||||| || ||||| || ||| ||| ||| || Sbjct 30191 GGGACTTTGATTACGACTACTTTGGGTTTAAAACTCTCGAGCGCGGGTACCTCTTCCGCG 30250 Query 248867 TTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTC 248926 | | ||||| | ||||| || ||||| ||| | ||||| ||||| | || || | Sbjct 30251 TAAACGGCAAAGTGGTGGAGCGTCCGCAGCAAATGATTATGCGCGTGGCACTTGGCATCC 30310 Query 248927 ACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGA 248986 ||||| |||| | | || || ||||||||| ||| || | | | Sbjct 30311 ACAAGAGCAACATTGCGGCCGCCCTGGAGACGTACGAGCTTATGTCGCAAATGTTTTTCA 30370 Query 248987 CACATGCCACACCGACGCTCTTCAACGCCGGTAC----CGTCAACAATCAGCTGAGCTCG 249042 | |||||||| ||||| || || |||||||| || || | |||| ||| || Sbjct 30371 CGCATGCCACCCCGACACTTTTTAACGCCGGCACGCCGCGCCCACAA----CTGTCGTCT 30426 Query 249043 TGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAG 249102 ||||| || | ||||||||||||||||| | || |||||||| |||||| | || || Sbjct 30427 TGCTTCCTATTGGCCATGCAAGACGACTCAATTGAAGGCATTTACGACACGTTAAAGCAA 30486 Query 249103 ACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCG 249162 || || ||||||| || || || || || || | |||||||||||| Sbjct 30487 TGTGCCTGTATCTCTAAATGGGCCGGAGGTATTGGCATCAGTATGCACAACATCCGAGCC 30546 Query 249163 AAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTG--ATGGTATCGTACCCCTCCTTC 249220 | |||||| ||| || || || || || |||| ||| | ||| | || | Sbjct 30547 ACCAACAGCTACATCCGAGGCACGAACGGC-TC-GTCCAATGGCATCATCCCCATGCTGC 30604 Query 249221 GATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGT 249277 | ||| | |||||| ||| | | |||||| ||| || || ||||| || | Sbjct 30605 GGGTGTTTAACGACACCGCGCGGTACGTGGACCAGGGCGGAGGCAAGCGTAAGGGCTCCT 30664 Query 249278 TCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGA 249337 ||||||| |||||||| |||||||| ||| | || |||||| ||||| | |||| Sbjct 30665 TCGCCATCTATTTGGAGCCTTGGCACGCAGATGTGTTCGAGTTCTTGGACCTCCGTAAGA 30724 Query 249338 ACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACT 249397 || ||||||||||| | | || || ||||| ||||||| ||| ||||| | || Sbjct 30725 ACCACGGCAACGAGTTGCACCGCGCTCGCGACCTGTTCTACGCCCTTTGGGTGCCTGATC 30784 Query 249398 TGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCC 249457 |||||||| | || | ||| | ||| | |||| || || || ||| |||| Sbjct 30785 TGTTCATGAAGAGGGTGGAAGCCAATGGCAAGTGGAGTCTCTATTGCCCTAACGAGGCCC 30844 Query 249458 CGGACCTCATCGATCTACACGGCGCCGACTTCGACCAAGCCTATAAGAAATACGAATCCA 249517 | | ||| || |||| ||| ||||| |||| | || ||||| | Sbjct 30845 CTGGACTCTATGAGTGCTGGGGCGACGAATTCGAGGCCCTCTATGAAAAGTACGAGACGG 30904 Query 249518 ACG---GCATCGGCAAGACAATCAAGGCTCGGACCCT---TTTTGCGAAGGTGGTGGAGT 249571 | | || | ||||||| ||||| || | | || || || | | |||| Sbjct 30905 AGGGACGCGCCCGCAAGACGATCAACGCCCAGCAGCTGTGGTTCGCCA---TATTGGACG 30961 Query 249572 CCCAGATAGAGACAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGTGCAACGCCAAGAGT 249630 ||||||| ||||| || | ||| | |||| |||| ||| |||||| |||| |||| Sbjct 30962 CCCAGATTGAGACGGGAGTGCCCT-TTATGTTGTACAAGGACGCGGCCAACCGCAAGTCG 31020 Query 249631 AACCAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAGAGGTGATTCAATAC 249690 ||||| | | || || || |||||||| || | || |||||||| | ||| Sbjct 31021 AACCAGAAGAACCTCGGCACGATCCGCTCCAGCAACTTATGCTGTGAGGTGATGGAGTAC 31080 Query 249691 TCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGC 249725 |||| ||| ||| | || || |||||| |||| Sbjct 31081 ACGTCGCCGGACGAGGTGGCTGTGTGCAACTTGGC 31115 >seq1284 Length=346222 Score = 116 bits (128), Expect = 8e-21 Identities = 267/396 (67%), Gaps = 11/396 (3%) Strand=Plus/Minus Query 253994 TGGCGACCTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCAT 254053 |||| | || || || ||| | ||| |||| ||||| || || ||||||||||| ||||| Sbjct 334891 TGGCCAGCTGCCCCACTTGTTGTTCTACGGACCTCCAGGCACGGGCAAGACGTCCACCAT 334832 Query 254054 CCTGGCGCTGGCCCGAACCCTGTTGGGCGAGGGGAAC---ATGAGAGAGCGCGTGCTCGA 254110 ||||| ||| || || || || || | | || | ||| | | || Sbjct 334831 TGTGGCGGTGGGGCGCCAGCTCTTCGGTCCGGACTTCCGCAAGAATGGCCGCTTCTTGGA 334772 Query 254111 GCTGAACGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTC 254170 ||||||||| || || || || || | | || || ||||| ||| |||| | ||| | Sbjct 334771 GCTGAACGCATCGGATGACCGAGGCATTAAGGTGGTGCGCGAGAAGGTCAAAAGCTTCGC 334712 Query 254171 CAAGATGTCGATTTCGTCGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGA 254230 | || | || | | ||| | ||| ||||| || ||| || | | || || Sbjct 334711 CCAGGGTGCCATCAGCACCT-CCAGC--GGCCTCCCGCCCTTTAAGATCATTGTGCTCGA 334655 Query 254231 CGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCA 254290 ||||| ||| ||||||||| |||||| ||||| || || || || | |||||||| | Sbjct 334654 TGAGGCCGACTCCATGACGGGCGACGCACAGTCGGCTCTGCGTCGTATGATGGAGAACTA 334595 Query 254291 CTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTG--TCGAAGATCATCGCCCCG 254348 |||| || ||||| || ||||| | || ||||| ||| ||| | | || | || Sbjct 334594 CTCCAAGGTCACGCGCTTCTGCCTCATCTGTAACTATGTGAGTCGCATA--ATTGAGCCT 334537 Query 254349 CTGGCTTCTCGGTGCGCCAAGTTTCGATTCAGCACC 254384 ||||||| || ||||||||||| || ||| ||||| Sbjct 334536 GTGGCTTCCCGATGCGCCAAGTTCCGTTTC-GCACC 334502 >seq859 Length=70301 Score = 91.5 bits (100), Expect = 3e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 115402 ATCGCACATCTGCTCTGAATCGGTTCGATGATTTTGGTGGAGTTGTTGCAGACTATGATG 115461 || || || | |||||| || ||||| ||||| ||||| |||||||||||| | | | Sbjct 11604 ATGGCGCAGCGGCTCTGGATGGGTTCAATGATCTTGGTCGAGTTGTTGCAGGCCAGCGCG 11663 Query 115462 AACCGCGTCGTGCTCGAGTAAACATCCATGATCCGTCGCAGCGCCTGGAAAGCACCAGGT 115521 || ||||| ||| |||| | | |||||| | || ||||||||||| || | | Sbjct 11664 AAGCGCGTGGTGGCCGAGAAGATCTCCATGGTGCGGCGCAGCGCCTGCTGGGCCGCGGAC 11723 Query 115522 GTCATCGAGTCTGCCTCGTCGAGAACGACAATCTT 115556 ||||| ||||| |||||||| || | || ||||| Sbjct 11724 GTCATGGAGTCGGCCTCGTCCAGGATCACGATCTT 11758 >seq1029 Length=318196 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 157247 CCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAA 157306 |||| ||| ||||||| |||| | ||||| |||||||||||||| ||||| || || Sbjct 194128 CCGGCATTGGAGTACTCGCCCACGCGTTTCTCGAAAAAGTTGGTCTTGCCCTGCAGCGAG 194069 Query 157307 ATCATGTCCATCCACTCGAATGGGTT 157332 |||||||||||||| ||||| ||||| Sbjct 194068 ATCATGTCCATCCAATCGAACGGGTT 194043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073744167666688