Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq926 334 7e-87 seq784 152 5e-32 seq147 127 2e-24 >seq926 Length=67561 Score = 334 bits (370), Expect = 7e-87 Identities = 1223/1893 (65%), Gaps = 41/1893 (2%) Strand=Plus/Minus Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCC 22164 ||||||||| || |||| ||||||| || ||| ||| | || |||||||| Sbjct 32037 CTTGTCCACGGTGAACTTGATGGCGTCGGCTTTCGGGCGTCCGCGCATGTAGTACATGCC 31978 Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG 22224 ||||| || ||| ||||||| ||||| || || |||||||| | || | |||| Sbjct 31977 GGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATCGACGTGAGCTTGCTGATGGTCGG 31918 Query 22225 CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGC 22284 | | |||| | |||| |||||||||||| || |||| || || ||||| | Sbjct 31917 GTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAATGTACGCACCGCGGTCGGCCGA 31858 Query 22285 CATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTC 22344 || | | || | | | || ||||| || ||||||||| | | ||| | Sbjct 31857 CAGGTCCAGCACCGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTCTCCTTGACGTG 31798 Query 22345 TAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAAT 22404 ||| |||| | || |||| ||||| ||| | | || | |||| || | Sbjct 31797 GTCCGGGATCGCCTTGACGTTCTGCACGGAGCCGCTGTCGTTCAAGATCTGGTTGCGCA- 31739 Query 22405 CGTATCGT-TCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCA-CT 22462 ||| | |||| | |||| || ||| || || | ||| | ||| || | | Sbjct 31738 CGTCCGGCGTCCAGATGCCGAGCTCGATCAGCTCCTTCATCAGGTACTTGTTGACGATCG 31679 Query 22463 TGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGAT 22522 |||| ||| || | || || ||||| | ||| |||||||| ||| |||| |||| ||| Sbjct 31678 TGAA-CTCTCCAGCCAGCACTCGGCGGTTGTACATGTTGGACGTGTACGGCTCGATAGAC 31620 Query 22523 TCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAG 22582 || |||||||| || ||||| || || ||||| |||||||| || |||| ||| |||||| Sbjct 31619 TCGTTGTTTCCAAGGATCTGGGCCGTGGAAGCCGTCGGCATGGGGGCCACCAGCAGCGAG 31560 Query 22583 TTTCTCAAGCCGTGCTTTGAAATTTTACTC-TTGAGCATCGACCAGTCCCACAGATCGGA 22641 || | | |||||||| || | ||| |||||| | | ||||| ||||| | | || Sbjct 31559 TTGCGGAGTCCGTGCTT-GATCACGTCCTCCTTGAGCGTAGCCCAGTTCCACATACCCGA 31501 Query 22642 CGGCG---TCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCC 22698 || || | || | ||||||| ||| | || || | ||| || || || ||| Sbjct 31500 CGACGGGGTGAC---GCCCCACATGTCGAACTGGAAGATGCCCTTGCTAGCGGGCGAGCC 31444 Query 22699 TTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCT-CGCCTCCAACGCGC 22757 | | |||| |||||||| || | | ||| | || || | || ||||| ||| Sbjct 31443 CTGGAACGTCTCGTACGGGCCGAGTTCCTTGGCGATCTC-CATCGACGTCTCCATGGCGG 31385 Query 22758 CGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACG 22817 || | || || ||||||||||| |||||||| | || ||| |||| ||| ||| Sbjct 31384 CGAAGTAGATGGTCTCGAAGATGTTCTTGTTGAGCTCCCGGGCCTTCTCGCTCTCGAACG 31325 Query 22818 GCATACG-CATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGG 22876 | || ||| | | ||||||||||| | ||||| ||||| |||||||| || ||| Sbjct 31324 -CGTAGTTCATGAGGATAAACGCGTCCGCGAGGCCCTGGACGCCAATACCGATGGGGCGG 31266 Query 22877 TTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTG 22936 | || || ||| |||||| || || || | || ||||| || Sbjct 31265 TGACGCATGTTGGACTTGCGCGCCTCGATCACGGGGTAGTAGTTGACGTCGATGACCTTG 31206 Query 22937 TTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCC 22996 || ||||| | ||| || | ||||| | | ||| | |||| || Sbjct 31205 TTTAAGTTGCGGGTGACCACCTTCGTCACTTCATACAACTTCTGGTAGTTGAAAACTCC- 31147 Query 22997 GATTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCT 23056 || | || ||||| | || | || || | ||||| || ||||||||||| Sbjct 31146 --TTCCTCCACGAACTTAGGCAGCGCCACAGACGCCAAGTTGCACACAGCCACCTCGTCC 31089 Query 23057 TTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTG 23116 ||||||||||| | | || |||| ||||| | |||||||| | || Sbjct 31088 GGCGACGTGTACTCCATCACCTCACAGCATAAGTTGCTGGAGCGGATCGTGCCGAGGTTC 31029 Query 23117 CTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCG 23176 ||||||| || || ||| || |||||||| | ||| | ||| |||||||| Sbjct 31028 TTCTGGTTCGACTTGCGGTTGGCCGCGTCCTTGTACAACATAAAGGGCACTCCCGTCTCA 30969 Query 23177 ACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGT-GAACACGTCGCACGTACCT 23235 | ||| | || | || || ||||| ||| |||| || | | || | | | Sbjct 30968 ATCTGGGCGTCCAATATGGCGAACCACAGCTGCTGGGCGTTGATCGTCTTGCGGGCGCGT 30909 Query 23236 GCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAG 23295 ||| | || |||||||||| || | || || |||||| | || | || || || Sbjct 30908 CCCTCCGTC-TCGTACTTTTCATAGAGGGCCTCGAATTCGTCGCCCCAGCACTCATAGAG 30850 Query 23296 GCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATT---TTCAACGCGTCT 23352 || || | | | || || |||||||||| | | |||| ||| || | | Sbjct 30849 TCCAGGGGCCTCGTTAGGGCAATAGAGACTCCACTT---GCCATTGGCTTCCACCCTCTT 30793 Query 23353 CATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTT 23412 ||| || ||||| || | ||| || ||||||||||| ||||| ||||| | ||| || Sbjct 30792 CATGAACAGATCAGGCACCCAAAGGGCGTAGAACAGGTCGCGAGCGCGGTGCAACTCGTT 30733 Query 23413 GCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTA 23472 |||| |||||| | ||||| || || ||||| || || ||||| ||||| | || Sbjct 30732 GCCGTGGTTCTTACGGAGGTCCAAGAACTCGAACACATCTGCGTGCCAAGGCTCCAAATA 30673 Query 23473 AACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTT 23532 | ||| || | |||| | ||| |||||||| || ||||| || || |||| ||| Sbjct 30672 GATGGCGAAGGAGCCCTTACGCTTGCCTCCGCCCTGGTCCACGTACCGCGCGGTGTCGTT 30613 Query 23533 GTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGA 23592 |||| | ||||| || | || || ||||||| |||| | || ||| | | Sbjct 30612 AAACACCCGCAGCATGGGGATGATGCCATTGGACGAGCCG--TTCG--TGCCTCGGATGT 30557 Query 23593 ACCTTTT----GCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATA 23648 | || || ||||| | |||||| | || || || |||||| || |||| || | Sbjct 30556 AGCTGTTGGTGGCTCGGATGTTGTGCATACTGATGCCAATACCTCCGGCCCATTTAGAGA 30497 Query 23649 TCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGA 23708 | || ||||| || | |||||||| ||||| || || ||| |||| | || | Sbjct 30496 TACAGGCACATTGCTTTAACGTGTCGTAAATGCCTTCAATTGAGTCGTCTTGCATGGCCA 30437 Query 23709 CCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGG 23768 | ||| || || |||| ||| | ||||| |||| || ||||||||| ||| Sbjct 30436 ATAGGAAGCAAGACGACAGTTGTGGGCGCGGCGTGCCGGCGTTAAAAAGTGTCGGGGTGG 30377 Query 23769 CGTGCGTAAAGTATCCATT--CGACATTAGATTGTACGTGTCGATGGCGGCATCAATG-T 23825 | ||||| || | |||| |||||| || | |||||| || | |||||| ||||| | Sbjct 30376 CATGCGTGAA--AAACATTTGCGACATAAGCTCGTACGTCTCCAGGGCGGCCGCAATGTT 30319 Query 23826 CCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGA 23885 |||| ||| || || | || |||||||| ||||| | || || | ||| ||| Sbjct 30318 GCTCT-TGTGGATGCCAAGTGCCACGCGCATAATCATTTGCTGCGGACGCTCCACCACTT 30260 Query 23886 CGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGT 23945 |||||| | ||| || || || | | |||||||| ||||| ||||| || | Sbjct 30259 TGCCGTTTACGCGGAAGAGGTACCCGCGCTCGAGAGTTTTAAACCCAAAGTAGTCGTAAT 30200 Query 23946 TAAAGTCACGATCGTGCACTATGGCCGAATTCA 23978 |||||| || ||||| | |||||||| |||| Sbjct 30199 CAAAGTCCCGGTCGTGGATGATGGCCGAGTTCA 30167 >seq784 Length=83642 Score = 152 bits (168), Expect = 5e-32 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| |||||||| | ||||| || ||||| Sbjct 19012 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 18953 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| |||| | ||||| |||| || ||||||||| ||| | ||||| |||||| Sbjct 18952 GACTCGATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 18893 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||||||||| ||| | || ||| | || ||||||| || ||| Sbjct 18892 CAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAAC 18833 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || ||||| || || ||||| || Sbjct 18832 ATTCAGAAGGAGTCGACGCTGCACCTGGTGCT 18801 >seq147 Length=128699 Score = 127 bits (140), Expect = 2e-24 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||| || || || ||||| ||||| ||||| || ||||| | ||||| || || Sbjct 64989 AATCATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCC 64930 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||||||| | || | ||||| |||| ||| ||||||||| ||| | ||||| || Sbjct 64929 GTCCGACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGCATCCCGCCTGA 64870 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||||||||| || ||||| ||||| ||| | || ||| Sbjct 64869 CCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGAC 64830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445757395518720