Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq191 122 2e-22 >seq191 Length=126180 Score = 122 bits (134), Expect = 2e-22 Identities = 449/687 (65%), Gaps = 16/687 (2%) Strand=Plus/Minus Query 35137 AGGAGTGAAGAAGGACGATAGAACTGGAACAGGAACTCTATCCATTTTTGGACCCCAAAT 35196 ||||| |||| | ||| | || |||||||| || || || | || ||| | || || Sbjct 33916 AGGAGCGAAGCGCGGAGATCGCACGGGAACAGGGACGCTGTCGGTCTTCGGAGCGCAGAT 33857 Query 35197 GAGGTTCTCTCTTCGAGACGACACTATTCCAGTT-CTCACTACCAAGAAAATTTTCTGGA 35255 | | ||| ||| | | | || | |||| || ||||| |||||| | |||||| Sbjct 33856 GCGCTTCAGTCTGAGGGGCAACG-TGTTCCCCTTGCTCACGACCAAGCGCGTCTTCTGGC 33798 Query 35256 GAGGAGTTGTGGAAGAACTCTCGTGGTTCATCAGGGGCAATAC-AGA-CGCCAAAGAATT 35313 | || || | ||| || || |||||||||||| ||| | || || ||| | | | Sbjct 33797 GCGGCGTGGCGGAGGAGCTGCTGTGGTTCATCAGTGGCGACACGAGTGCGCACACGC--T 33740 Query 35314 GGCCAAGAAGAAGATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAG 35373 | ||||| | || ||||||||| ||| ||||| |||||||| | | |||||||| | Sbjct 33739 GCAGGAGAAGGATATCCACATCTGGGACGGCAATGGATCGCGGGAGTATCTGGACAGTCG 33680 Query 35374 AGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCA 35433 ||| | | | | || || || | ||||| || ||||| ||||| |||||||| Sbjct 33679 AGGACTGCAGTCGCGGGAAGTTGGCGACCTCGGACCGGTCTACGGCTTCCAGTGGCGTCA 33620 Query 35434 TTTTGGTGCTGAATA-TGATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAAT 35492 |||||| || | || || || | |||| || ||||| |||| | || || Sbjct 33619 TTTTGGAGCAAAGTACACGGACATGCAC-GCCGACTACACTGGTCAGGGCGTGGACCAGC 33561 Query 35493 TGGCCAATATACTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGG 35552 | || | | | | | ||| | |||||| || | |||| | || ||| Sbjct 33560 TCGCTGAGGTGATTGACAAGCTGCGCACAAATCCGACCGACCGTCGGATCGTGCTGTCGG 33501 Query 35553 CATGGAATCCTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATG-ACTGCTCAA 35611 | |||||||| |||||| | ||||| || || || || |||||| |||| || Sbjct 33500 CGTGGAATCCGGCGGATCTCAATGAGATGGCGCTCCCGCCGTGTCACATGTTCTGC-CAG 33442 Query 35612 TTTTATGTGGCTAATGGAGAATTGTCGTGCCAGTTGTATCAGCG--AAGCGGAGATGTCG 35669 || || ||||| | || || ||||| |||||| |||| ||||| || || ||| | Sbjct 33441 TTCTACGTGGCCGACGGCGAGTTGTCCTGCCAGATGTACCAGCGCTCGGCCGACATG--G 33384 Query 35670 GGTTGGGCGTGCCCTTCAATATTGCATCATACTCTCTTCTGACTCATCTGATGGC-CAGT 35728 | | |||||||| ||||| || || ||| | | || || | ||||| || ||| Sbjct 33383 GACTTGGCGTGCCGTTCAACATCGCCAGCTACGCGTTGCTTACGCGACTGATAGCACAG- 33325 Query 35729 ATGGTGGGTCTAAAACCGGGAGAGTTTATCCTCACTCTTGGTGACGCACACATTTATAAT 35788 || || || || || || |||||| ||| | | ||||||| || ||| | ||| | Sbjct 33324 GTGAGTGGACTGAAGCCTGGCGAGTTTGTCCACGTTATTGGTGATGCCCACGTGTATCTT 33265 Query 35789 ACCCACATTGAGGTGTTAAAGAAGCAG 35815 | ||| | ||| | | |||||||| Sbjct 33264 AACCATGTCGAGCCGCTCCAGAAGCAG 33238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989563510663280