Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1029 140 5e-28 seq191 123 4e-23 seq926 122 1e-22 seq895 116 5e-21 >seq1029 Length=318196 Score = 140 bits (154), Expect = 5e-28 Identities = 390/587 (66%), Gaps = 21/587 (4%) Strand=Plus/Plus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| || ||| | | || ||| | ||| | |||||||| || || ||||||| || Sbjct 188831 CTGTTCCCGATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAAGCGGAGGCCTCGTTC 188890 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||||| ||| ||| | || ||| | |||||| | || |||| || | |||| Sbjct 188891 TGGACGGCCGAGGAGCTGGACCTGGTGCACGACCTGAAGGACTGGGCGAACC---TGACG 188947 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || | ||||| || || |||| | |||||||||| || | | ||| || ||| Sbjct 188948 GACAACGAGCGGTTCTTCATCAAGCACGTGCTGGCCTTCTTCGCTGCCAGCGACGGCATC 189007 Query 125175 GTCAACGACAATCTGTTGACACGATTCTCT-CAA-GAGTTGACCATTCCAGAGGTGTCGT 125232 || ||||| || ||| | || || || ||| || || | || |||| | Sbjct 189008 GTGAACGAGAACCTG--GCCATGAACTTCAGCAATGAAGTGCAGGTACCGGAGGCCCGCT 189065 Query 125233 GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 |||| ||||| ||||| ||| || |||||| | ||||| || |||| || || | Sbjct 189066 GCTTCTACGGTTTCCAGATCGCCATCGAGAACATCCACTCAGAGGTGTATTCGCTGCTCA 189125 Query 125293 TTGACATGTACATTCGCGATCCGCAACGTAAA-----CACATGCTCTTTAACGCAATCGA 125347 |||||| |||||| ||| || ||| | | ||| |||| | || ||||| Sbjct 189126 TTGACACGTACATCAAGGATGCG--ACGGAGAAGGACCACCTGCTGCGT---GCCATCGA 189180 Query 125348 CACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGA-CGACA 125406 ||| | |||| | | || || || || |||| | | |||| ||| ||| Sbjct 189181 TACGATTCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGAGT 189240 Query 125407 AGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGG 125466 ||| |||||| | || | || || | ||||| |||| |||||||||||||| |||| Sbjct 189241 -GTCGTCGTACCCGGAGCGCGTGCTGACGTTCGCAACCGTGGAGGGCATCTTCTTCTCGG 189299 Query 125467 G-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCAC 125525 | | ||| ||| | ||||| ||||||||||||||||| |||| ||| || |||| | Sbjct 189300 GCTCGTTCTGCT-CGATCTTCTGGCTCAAGAAGCGCGGCCTCACGCCTGGCCTGAGCTTC 189358 Query 125526 AGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 |||||| | || || ||||||||| | ||| ||||| || Sbjct 189359 TCGAACGAGCTGATCAGCCGTGACGAGGGCATGCACACGGACTTCGC 189405 >seq191 Length=126180 Score = 123 bits (136), Expect = 4e-23 Identities = 278/410 (68%), Gaps = 6/410 (1%) Strand=Plus/Minus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 ||||| || || || || ||||| ||||||||| | || | || | ||||| ||| Sbjct 33657 GGCGACCTCGGACCGGTCTACGGCTTCCAGTGGCGTCATTTTGGAGCAAAGTACACGGAC 33598 Query 70127 -TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATT-GCAGACAATCATTGACACTC 70184 ||| | | ||||| | |||||||| || || || | || || | ||||||| | Sbjct 33597 ATGCACGCC-GACTACACTGGTCAGGGCGTGGACCAGCTCGCTGAGG-TGATTGACAAGC 33540 Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 | || ||||| || || | ||||||| ||| | |||||||| || ||| | Sbjct 33539 TGCGCACAAATCCGACCGACCGTCGGATCGTGCTGTCGGCGTGGAATCCGGCGGATCTCA 33480 Query 70245 ACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTACTCGTACGATGGCAAA 70303 | | ||||| || || ||||||||| |||| || ||||| ||| | ||| ||| | Sbjct 33479 ATGAGATGGCGCTCCCGCCGTGTCACATGTTCTGC-CAGTTCTACGTGGCCGACGGCGAG 33421 Query 70304 TTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATT 70363 ||||| ||| ||||| ||| | ||||||||||| || || || || || ||||| Sbjct 33420 TTGTCCTGCCAGATGTACCAGCGCTCGGCCGACATGGGACTTGGCGTGCCGTTCAACATC 33361 Query 70364 GCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAG 70423 || ||||| | || | |||| |||| || || | | || ||||| | |||| Sbjct 33360 GCCAGCTACGCGTTGCTTACGCGACTGATAGCACAGGTGAGTGGACTGAAGCCTGGCGAG 33301 Query 70424 TTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCC 70473 || || ||| ||||| || || ||||||||| | || || ||||||| Sbjct 33300 TTTGTCCACGTTATTGGTGATGCCCACGTGTATCTTAACCATGTCGAGCC 33251 >seq926 Length=67561 Score = 122 bits (134), Expect = 1e-22 Identities = 292/434 (67%), Gaps = 6/434 (1%) Strand=Plus/Plus Query 97785 AACTCTTTGCTGGTGGCACCGATGCCCACGGCTACCACTTCCCAAGTGTTTGGCAATGCT 97844 ||||| |||||||||| || ||||| |||||| |||| |||| | |||| || Sbjct 31558 AACTCGCTGCTGGTGGCCCCCATGCCGACGGCTTCCACGGCCCAGATCCTTGGAAACAAC 31617 Query 97845 GAATCTTTTGAACCGTTCACGTCAAACATGTACCAGAGACGCACCCAGTCTGGAGAGTTT 97904 || ||| | || |||| |||||| ||||||||| | | || | | |||||||||| Sbjct 31618 GAGTCTATCGAGCCGTACACGTCCAACATGTACAACCGCCGAGTGCTGGCTGGAGAGTTC 31677 Query 97905 -CAATTGACCAACGTGCACTTGGTTCGAGACTTGGAACG-GCTCAATCTGTGGAACGATG 97962 | || | | ||| | || || | || || | || |||| | |||| | Sbjct 31678 ACGATCGTC-AACAAGTACCTGATGAAGGAGCTG-ATCGAGCTCGGCATCTGGACGCCGG 31735 Query 97963 ACATGGCCCAGTTGATCATGTACAACAATGGGTCCATTCAAAACATTACCATCATCCCGG 98022 || || | | |||| || || ||| || ||| | || ||| | | ||||||| Sbjct 31736 ACGTGCGCAACCAGATCTTGAACGACAGCGGCTCCGTGCAGAACGTCAAGGCGATCCCGG 31795 Query 98023 AAGA-GTTGCGCAGAATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGAT 98081 | | || | |||| |||||||| || |||||||| | ||| || || | || Sbjct 31796 ACCACGTCAAGGAGAAG-TACAAGACGGTGTGGGAGATCAAGCAGAAGGCGGTGCTGGAC 31854 Query 98082 ATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCC 98141 || | |||||| | |||| |||||| ||||||||| ||| |||| | || | ||| Sbjct 31855 CTGTCGGCCGACCGCGGTGCGTACATTTGCCAGAGTCAGTCGCTCAACATCCACATCGCC 31914 Query 98142 GAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAG 98201 || || ||| ||| | || ||||| ||||| ||||| ||||| ||||| |||||| Sbjct 31915 GACCCGACCATCAGCAAGCTCACGTCGATGCACTTCTACGCCTGGAAGAAGGGGCTCAAG 31974 Query 98202 ACGGGCATGTACTA 98215 || ||||||||||| Sbjct 31975 ACCGGCATGTACTA 31988 >seq895 Length=65585 Score = 116 bits (128), Expect = 5e-21 Identities = 217/317 (68%), Gaps = 4/317 (1%) Strand=Plus/Minus Query 127443 GAATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGG 127502 ||| ||||| |||||||||||||| |||||| || || |||||||| | ||||||| Sbjct 48948 GAAGCCGTGGGTCAGGTGGCCTCCACTGGGCAGGTCCAGGCCCATGATGCGGTCGTGCGG 48889 Query 127503 TTTAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACA 127562 | | | ||||||||||| |||||||| ||||||||||||||| || || Sbjct 48888 GCGCAGCAGCGCCGTGTACACGGCGAAGTTGGCGGGCGAGCCCGAGTACGGCTGCACGTT 48829 Query 127563 CACTCCCCATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAG 127622 || ||||| | | ||||| || | | || | || |||||||| || | Sbjct 48828 GACGCCCCACTTGTCCTCGTCCAGGCCGTAGGCCGTCAGGGCGCGCTGCTGGCACAGGAT 48769 Query 127623 TTCGATGCGATCGATAAACTCGTTACCACCATAGTA--TCGCTTTCCGGGCCTACCCTCC 127680 ||||| ||||| | |||||| || || ||||| ||| ||| ||| ||||| Sbjct 48768 CTCGATCTTGTCGATGATCTCGTTGCCGCCGTAGTAGCGCGCGTTC--GGCAGGCCCTCG 48711 Query 127681 GAGTACTTGTTGATGAGACACGAACTCATGCATTCTCGCACCGGTAGAGTGGTAAAGTTT 127740 | |||||||||| | |||||||| | || ||| || || | | | || ||||| Sbjct 48710 GCGTACTTGTTGGTCAGACACGAGCCCAGGCAGTCCATGACGGCGCGCGACGTGAAGTTC 48651 Query 127741 TCCGATGCGATCAACTC 127757 ||||| ||||| | ||| Sbjct 48650 TCCGAGGCGATGAGCTC 48634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741044230604160