Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_004681.1 Length=75931 Score E Sequences producing significant alignments: (Bits) Value seq787 167 1e-36 >seq787 Length=83116 Score = 167 bits (184), Expect = 1e-36 Identities = 337/498 (68%), Gaps = 9/498 (2%) Strand=Plus/Minus Query 66838 CGCCTACATCGACGCTGAGCACTCCCTGGACCCCGAGTACGCCAAGGCGCTCGGTGTGGA 66897 ||||| ||||||||| || ||| || | ||| || | ||||||||||| || ||||| || Sbjct 18732 CGCCTTCATCGACGCAGAACACGCCATTGACGCCCACTACGCCAAGGCTCTGGGTGTCGA 18673 Query 66898 CCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGA 66957 | | ||| || || ||||||||| | ||||| | || |||||||||| || Sbjct 18672 CATTGACGCGCTGTACGTCTCGCAGCCGGACTCGGGCGAAGAAGCTCTGGAGATCGCCGA 18613 Query 66958 CCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGT 67017 | ||| ||| ||| || | | || | |||| || | ||| |||||| || ||||| Sbjct 18612 CACGCTCATCAGGTCGGGAGCGGTGGACCTCGTGGTGCTGGACAGTGTGGCAGCGCTGGT 18553 Query 67018 GCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCT 67077 |||||| || ||||| || || || || || ||| || | | ||||| ||||| || Sbjct 18552 GCCGCGTGCGGAGCTGGAGGGTGAAATGGGAGACCAGCAGATTGCACTGCAGGCGCGACT 18493 Query 67078 CATGTCGCAGGCCATGCGCAAGCTCACTGGCACCATCTCCAGCACCAA---CACGCTGAC 67134 |||| ||||| |||| |||||||| || | | |||| |||| ||| | | Sbjct 18492 CATGAGTCAGGCGCTGCGAAAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACCATTA- 18434 Query 67135 GCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGAC 67194 ||| | |||||| | ||| ||||| | || | | | || ||| | |||| Sbjct 18433 --TCTTCCTGAACCAGATTCGCCAGAAGGTGGGAATCAT---CTTCGGATCTCCTGAGGT 18379 Query 67195 CACCACGGGCGGAAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCAT 67254 || |||| |||| ||| || | | |||||| || || | |||| | ||||||| Sbjct 18378 TACGTCGGGTGGAACAGCTCTGCGTTACTACGCGTCTGTAAGGCTGGACATTCGTCGCAA 18319 Query 67255 CGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAAGTCGTCAA 67314 | || ||||| ||||| ||| |||||||||| || |||||| || | ||| Sbjct 18318 GACGGCCATCAAGGAGGGCGACCAGGTTGTCGGCAACGAAACGGTGGTGAAGGTGGCCAA 18259 Query 67315 GAACAAGCTGGCCCCGCC 67332 |||||| || ||| |||| Sbjct 18258 GAACAAACTTGCCTCGCC 18241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242849616982592