Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq1068 161 9e-35 >seq1068 Length=45886 Score = 161 bits (178), Expect = 9e-35 Identities = 198/268 (74%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 5500 CACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACG-CCACCT 5558 |||||||||| ||||| ||||| ||||| | |||| || || | | || |||||| Sbjct 20267 CACGCCCGTGCTGCCGAAGCCGCCGGCGCCACGCGCCGTGTCCTCGAT-CTCGTCCACCT 20209 Query 5559 CTTCCACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCT 5618 | | | || ||| || | |||| ||| |||||||| | ||||| || || Sbjct 20208 CCTGGATCTCCGGGTACTCGATCTTCTCGAGGATGAGCTGCGCCACGCGGTCTCCGCGCT 20149 Query 5619 TTACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGT 5678 | || ||| || | | || ||||||||| | ||||||||||||||||||||||| Sbjct 20148 TGACGGGGAAGTCCTCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCCGCGGTAGT 20089 Query 5679 CGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGG 5738 ||||||| |||||||| |||||| ||||||||| | ||||| ||| || |||||||| | Sbjct 20088 CGGCGTCGATCACGCCGGCGCCCGTGTCGATGAACTTCTTGAGCGCGAGTCCGGAGCGCG 20029 Query 5739 GAGCCACGCGGCCGTAGCACCCATCGGG 5766 | |||||||| ||||||| || ||||| Sbjct 20028 GCGCCACGCGCGCGTAGCAGCCGTCGGG 20001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430045930078592