Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq191 134 9e-27 seq1068 93.3 3e-14 >seq191 Length=126180 Score = 134 bits (148), Expect = 9e-27 Identities = 371/564 (66%), Gaps = 21/564 (4%) Strand=Plus/Plus Query 25413 AGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGG 25472 ||||| ||| ||||| || || || | || || ||||| || || || | | |||| Sbjct 33236 AGCTGCTTCTGGAGCGGCTCGACATGGTTAAGATACACGTGGGCATCACCAATAACGTGG 33295 Query 25473 ACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAG 25532 |||||||| || || | || || | || | || |||| ||| || | |||| Sbjct 33296 ACAAACTCGCCAGGCTTCAGTCCACTCACCTGTGCTATCAGTCGCGTAAGCAACGCGTAG 33355 Query 25533 CTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACA 25592 ||||||||||| || || || || | |||||||| || || | |||||| | ||| || Sbjct 33356 CTGGCGATGTTGAACGGCACGCCAAGTCCCATGTCGGCC-GAGCGCTGGTACATCTGGCA 33414 Query 25593 CGAGAGCTCTTCGTCGCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTAT 25652 || | ||| ||||| |||||| ||||| || | ||| ||||| || || || || Sbjct 33415 GGACAACTCGCCGTCGGCCACGTAGAACTGGCAGAACATGTGACACGGCGGGAGCGCCAT 33474 Query 25653 AAGGCCCA---AG-TCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGTCT-TCTGGG 25707 | || || || || ||||| || ||| | ||| | | ||| || | Sbjct 33475 ----CTCATTGAGATCCGCCGGATTCCACGCCGACAGCACGATCCGACGGTCGGTCGGAT 33530 Query 25708 TTGTCCC-----TGATAAGATCCGCGGTGTTTTGCAGCTGATCCACCCCCATCCCCGAGT 25762 |||| | || || || | | | ||||| ||||| ||| || | || Sbjct 33531 TTGTGCGCAGCTTGTCAATCACCTCAGCG------AGCTGGTCCACGCCCTGACCAGTGT 33584 Query 25763 AGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCG 25822 |||| || |||||||||||||| |||||| |||| | ||||||||| ||||| |||| Sbjct 33585 AGTCGGCGTGCATGTCCGTGTACTTTGCTCCAAAATGACGCCACTGGAAGCCGTAGACCG 33644 Query 25823 GTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAAC 25882 |||| ||||| ||| |||||| || | || | | |||| | | || | || | Sbjct 33645 GTCCGAGGTCGCCAACTTCCCGCGACTGCAGTCCTCGACTGTCCAGATACTCCCGCGATC 33704 Query 25883 CATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTC 25942 ||||| |||||||||| | | ||||||| ||| | | | ||| || | Sbjct 33705 CATTGCCGTCCCAGATGTGGATATCCTTCTCCTGCAGCGTGTGCGCACTCGTGTCGCCAC 33764 Query 25943 TGACGAACCACAGCAGCTCCGCCG 25966 ||| |||||||||||||||| ||| Sbjct 33765 TGATGAACCACAGCAGCTCCTCCG 33788 >seq1068 Length=45886 Score = 93.3 bits (102), Expect = 3e-14 Identities = 204/306 (67%), Gaps = 0/306 (0%) Strand=Plus/Minus Query 40691 GTCCACCTCCAGAACGGGAGGAGACTCGTACCTCTCGAGCACGAGCTGGGCTATCCTGTC 40750 |||||||||| | | || ||||| | ||||||| | |||||| || | | ||| Sbjct 20216 GTCCACCTCCTGGATCTCCGGGTACTCGATCTTCTCGAGGATGAGCTGCGCCACGCGGTC 20157 Query 40751 GCCCCTCTCGACCCGAAAAGGGTCGCACCCAAAGTTAAACAATATGACGCCGAGGTTGCC 40810 || | || ||| | || ||| | | ||| |||| || ||||| | |||||| Sbjct 20156 TCCGCGCTTGACGGGGAAGTCCTCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCC 20097 Query 40811 CCTGTAGTCGGGGTCCACCACCCCGGCACCGACGTCTATAAAATTTTCCAGGGCCAGGCC 40870 | |||||||| ||| | ||| ||||| || ||| || || || | || || || || Sbjct 20096 GCGGTAGTCGGCGTCGATCACGCCGGCGCCCGTGTCGATGAACTTCTTGAGCGCGAGTCC 20037 Query 40871 GGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGGGGCATCTTTACGGCCAGGTCCGTCTT 40930 ||| | || ||||| | ||||| ||| ||| | | | ||||||||||||| Sbjct 20036 GGAGCGCGGCGCCACGCGCGCGTAGCAGCCGTCGGGTACGGCGATGACCAGGTCCGTCTT 19977 Query 40931 TACCAGGGCCCTGCCAAAGGAGGGGACCACGACCGGGTAAGCGGCCGCTAGGTCGTAACC 40990 || ||| || |||| | ||||| |||| | |||||| |||| ||||| ||| Sbjct 19976 GACGAGGCCCTTGCCGCCCGCGGGGATCACGGCGTCGTAAGCAGCCGACAGGTCCAGACC 19917 Query 40991 CGCGGC 40996 |||||| Sbjct 19916 CGCGGC 19911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340130900989968