Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_006151.1 Length=143461 Score E Sequences producing significant alignments: (Bits) Value seq1367 107 2e-18 >seq1367 Length=26892 Score = 107 bits (118), Expect = 2e-18 Identities = 261/388 (67%), Gaps = 12/388 (3%) Strand=Plus/Plus Query 94088 CCCCAGAGCATGAACACCAGCTTGGGGCGGGTCTCGCAGAGCCGCTGGACGACGGCGCGC 94147 |||||||||| |||||| | |||| || || || || || ||||||| Sbjct 10196 CCCCAGAGCAGGAACACGACGTTGGAAGCTTCCTTGCTGACCCTGGAGATGACGGCGTCT 10255 Query 94148 ACGAGCCGCGCCCAGCCGAGCGGGGCGTGGGAGCCGGGGACCCCGCGCCGCACGGTCAGC 94207 || | || |||||||| || ||| ||| || | || || || ||||| ||| Sbjct 10256 GTGAACTGCTCCCAGCCGCGCTTCTTGTGCGAGTTGGCCTCTCCTCGACGGACGGTAAGC 10315 Query 94208 GTCGTGTTCAGCAGCAGCACCCCGCGGCGCGCCCAGGCCTCCAGGCAGCCGTGGGCGGGC 94267 ||||| ||||||||||| || | || |||| || ||||||||||| ||| Sbjct 10316 ACAGTGTTGAGCAGCAGCACGCCCTGTCGACTCCAGCAAGACAAGCAGCCGTGGGTGGG- 10374 Query 94268 GCGGGCAGCGTCGGGTACGTCGCCCG-GACCGCCGCGAAGATGTTGGCCAGGCTCGGGGG 94326 ||| ||| | | |||||| | | || || ||||||||| ||||| || || Sbjct 10375 GCGCGCAATGCCC---ACGTCGTTCATGGCCTCCTTGAAGATGTTCTTGAGGCTGGGCGG 10431 Query 94327 GATCGGCACCCCGCGCCGGACGCTGAAGGCCAGCCCGTGGGCCTGGCCCGGCCCGTGGTA 94386 ||| || ||| | || || ||| ||| ||||| ||||| |||||||||||| Sbjct 10432 CGGCGGGACTCCGTGGCGCACCGAGAAACTCAGTCCGTGAGCCTGCTGCGGCCCGTGGTA 10491 Query 94387 CGGGTCCTGGCCGATGATGACCACCTTGACGTCCTCG--GGCGCCGTGAGGC-GCGTCCA 94443 |||||||||||| | || |||||||||| ||| | ||||| || || ||| | Sbjct 10492 CGGGTCCTGGCCCAGAATCACCACCTTGAGGTCGGAGAAGGCGCAGTCTCGCAGCGCC-- 10549 Query 94444 GGCGAACACGTCCTCGCGC-GCGGGCAG 94470 |||||||||||| || || ||||| || Sbjct 10550 -GCGAACACGTCCGCGGGCGGCGGGTAG 10576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 458937929266560