Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq818 145 1e-30 seq1062 140 5e-29 seq1506 127 3e-25 >seq818 Length=217496 Score = 145 bits (160), Expect = 1e-30 Identities = 180/244 (74%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | || ||||| || |||||||| || ||||||||||| || | Sbjct 109800 CGCCAAGCGTCACCGCAAGGTC-CTTCGCGACAACATCCAGGGCATCACCAAGCCTGCCA 109742 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| || || |||||||| || |||||| |||| || | |||| || |||| Sbjct 109741 TCCGTCGTCTCGCACGCCGTGGTGGTGTGAAGCGTATCTCCGGCCTCATCTACGAGGAGA 109682 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| | |||||| ||| ||| |||| || | || ||| || | Sbjct 109681 CCCGCGGTGTCCTCAAGGTGTTCCTCGAGAACGTCATCCGCGACTCGGTCACCTACACTG 109622 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||||| || || ||||| || ||||||| |||| || || | || || || | Sbjct 109621 AGCACGCTCGCCGCAAAACTGTGACGGCCATGGACGTCGTGTACGCCCTCAAGCGCCAGG 109562 Query 16671 GCCG 16674 |||| Sbjct 109561 GCCG 109558 >seq1062 Length=403632 Score = 140 bits (154), Expect = 5e-29 Identities = 179/244 (73%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 |||||||||||| ||| || || ||||| || |||||||| || ||||||||||| || | Sbjct 33309 CGCTAAGCGTCACCGCAAGGTC-CTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 33367 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| || |||||||| || || |||||| |||| || | |||| || |||| Sbjct 33368 TCCGTCGTCTCGCACGTCGTGGCGGTGTGAAGCGTATCTCCGGCCTCATCTACGAGGAGA 33427 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| | |||||| ||| ||| |||| || | || || || | Sbjct 33428 CCCGCGGTGTCCTCAAGGTGTTCCTCGAGAACGTCATCCGCGACTCGGTCACTTACACGG 33487 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||||| || || || ||||| ||||||| |||| || || | || || || | Sbjct 33488 AGCACGCTCGCCGCAAAACCGTCACTGCCATGGACGTCGTGTACGCTCTCAAGCGCCAGG 33547 Query 16671 GCCG 16674 | || Sbjct 33548 GACG 33551 >seq1506 Length=344042 Score = 127 bits (140), Expect = 3e-25 Identities = 176/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| || ||||| |||| | || ||||| || |||||||| || ||||||||||| || | Sbjct 119168 CGCCAAACGTCACCGCAAGGTC-CTTCGTGACAACATCCAGGGCATCACCAAGCCGGCCA 119110 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| ||||||||||| || || ||||| ||||||| | |||| || |||| Sbjct 119109 TCCGCCGTCTCGCTCGTCGTGGCGGTGTGAAGCGCATCTCTGGCCTCATCTACGAGGAGA 119050 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| ||||||| | | ||| |||| || | || || || | Sbjct 119049 CGCGCGGCGTGCTCAAGGTCTTCCTGGAAAACGTCATCCGCGACTCCGTCACGTACACGG 118990 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||||| || || ||||| || ||||||| |||| || || | || ||||| | Sbjct 118989 AGCACGCTCGTCGCAAAACTGTGACGGCCATGGACGTCGTGTACGCGCTCAAGCGTCAGG 118930 Query 16671 GCCG 16674 | || Sbjct 118929 GACG 118926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073722479888