Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq926 345 1e-89 >seq926 Length=67561 Score = 345 bits (382), Expect = 1e-89 Identities = 1134/1735 (65%), Gaps = 43/1735 (2%) Strand=Plus/Plus Query 363445 GTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTT 363504 || || || |||||||| ||| | ||||| || || |||| ||||| | || Sbjct 30265 GTGGAGCGTCCGCAGCAAATGATTATGCGCGTGGCACTTGGCATCCACAAGAGCAACATT 30324 Query 363505 GATGCCGCGATTGAAACATATAAGCTTCTAAGT-GCTCGTGTATT-CACGCACGCCACGC 363562 | ||||| | || || || ||||| | || || ||| || |||||| ||||| | Sbjct 30325 GCGGCCGCCCTGGAGACGTACGAGCTTAT--GTCGCAAATGTTTTTCACGCATGCCACCC 30382 Query 363563 CAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAA 363622 | ||| | | || || || || | ||||| |||| |||||||| || | | Sbjct 30383 CGACACTTTTTAACGCCGGCACGCCGCGCCCACAACTGTCGTCTTGCTTCCTATTGGCCA 30442 Query 363623 TGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCA 363682 || | ||||| || || || || || | ||||| | ||| | ||||| ||| || | Sbjct 30443 TGCAAGACGACTCAATTGAAGGCATTTACGACACGTTAAAGCAATGTGCCTGTATCTCTA 30502 Query 363683 AGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTC 363742 | || || || ||||| | || ||||| | || || ||||| ||||| | Sbjct 30503 AATGGGCCGGAGGTATTGGCATCAGTATGCACAACATCCGAGCCACCAACAGCTACATCC 30562 Query 363743 GCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTG 363802 | ||||| || | || ||||| | | |||||||| || |||||| || | || | Sbjct 30563 GAGGCACGAACGGCTCGTCCAATGGCATCATCCCCATGCTGCGGGTGTTTAACGACACCG 30622 Query 363803 CGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGC 363862 || ||||||| |||||||| ||||| ||||| || || | || || || ||| | |||| Sbjct 30623 CGCGGTACGTGGACCAGGGCGGAGGCAAGCGTAAGGGCTCCTTCGCCATCTATTTGGAGC 30682 Query 363863 CTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAAT 363922 || || || ||| | || ||||| | || ||||| || ||| || || ||| | Sbjct 30683 CTTGGCACGCAGATGTGTTCGAGTTCTTGGACCTCCGTAAGAACCACGGCAACGAG---T 30739 Query 363923 TGC---GTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCG 363979 ||| | || || || |||||||| || |||||||| |||| | || |||||| | | Sbjct 30740 TGCACCGCGCTCGCGACCTGTTCTACGCCCTTTGGGTGCCTGATCTGTTCATGAAGAGGG 30799 Query 363980 TGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATG 364039 |||| || | || ||| |||| |||||| |||| || || || | || Sbjct 30800 TGGAAGCCAATGGCAAGTGGAGTCTCTATTGCCCTAACGAGGCCCCTGGACTCTATGAGT 30859 Query 364040 TATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTA 364099 ||||| ||||| | | || || || |||||||| || |||||||| || || | Sbjct 30860 GCTGGGGCGACGAATTCGAGGCCCTCTATGAAAAGTACGAGACGGAGGGACGCGCCCGCA 30919 Query 364100 AGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAA 364159 |||| || ||| ||| |||| ||||| ||||| |||| | ||||||||||| ||| Sbjct 30920 AGACGATCAACGCCCAGCAGCTGTGGTTCGCCATATTGGACGCCCAGATTGAGACGGGAG 30979 Query 364160 CACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTA 364219 |||| |||||||||||| || || |||||||||||| |||||| || |||| || | Sbjct 30980 TGCCCTTTATGTTGTACAAGGACGCGGCCAACCGCAAGTCGAACCAGAAGAACCTCGGCA 31039 Query 364220 CAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTG 364279 | || | |||||| |||| ||| | || || ||||| | || |||||| | Sbjct 31040 CGATCCGCTCCAGCAACTTATGCTGTGAGGTGATGGAGTACACGTCGCCGGACGAGGTGG 31099 Query 364280 CCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGATGGTACTTTTGACC 364339 | || || ||| | ||||| | ||||| || ||| || | || || ||| || Sbjct 31100 CTGTGTGCAACTTGGCGTCTGTGGCGCTGCCTAAGTTCGTGGAGGAAGGAGTTTTCAACT 31159 Query 364340 ACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGACA 364399 ||||| | | ||||| || || | | || |||| | ||||||| |||||| Sbjct 31160 ACCAGAAGTTGTATGAAGTGACGAAGGTGGTCACCCGCAACTTAAACAAGGTCATCGACG 31219 Query 364400 AGAATTATTATCCAATTCCTGA---AGCCGAGC-GTTCTAATATGCGTCATCGCCCGATT 364455 || || || || | ||| || || || || || |||||||| ||||| || Sbjct 31220 TCAACTACTACCC----CGTGATCGAGGCGCGCAAGTCCAACATGCGTCACCGCCCCATC 31275 Query 364456 GGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCG 364515 ||| |||| || ||||||||||| |||| ||||| | | || || || || | Sbjct 31276 GGTATTGGCGTCCAGGGCCTCGCGGACGCGTTTATCCTCATGAACTACGCGTTCGA-GAG 31334 Query 364516 CCTG-ACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGAC 364574 | | | || || | || || ||| | ||||| || || || || || ||||| ||| Sbjct 31335 CGAGAAGGCCCGGGAGCTCAACAAGAACATCTTCGAGACCATCTACTTCGCCGCCATGGA 31394 Query 364575 TGCTTCGTGTGATTTGGCAAA--AACCAAGGGAAAGTACTCTACTTATGAGGGGTC-CCC 364631 | ||| || | || || ||| || |||| || | |||| || ||| Sbjct 31395 GACGTCGATGGAGATCGCCAAGGAAC--TCGGCCCGTACGAGACGTTCCAGGGCTCGCCC 31452 Query 364632 TCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCG----AT 364687 || | |||| | |||||||| || | ||| ||||| || || ||| | | Sbjct 31453 GCTAGC-AAGGGCATCTTCCAGTTCGACATGTGGGGCGTCACCCCGTC-GTCGGGTATGT 31510 Query 364688 GGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACT-CGCAACTCCCTCGTT 364746 ||||||||| |||||| |||| | ||||| || ||| |||||||| || | Sbjct 31511 GGAACTGGGCTACGCTCAAGGAGGACGTGATCAAGCACGG-ACTCCGCAACTCGCTGCTG 31569 Query 364747 ACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAA 364806 || |||||||| |||||||| || || |||||||| ||||||||||||| |||| Sbjct 31570 GTGGCCCCCATGCCGACGGCTTCCACGGCCCAGATCCTTGGAAACAACGAGTCTATCGAG 31629 Query 364807 CCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAAT 364866 |||| || ||| | || ||||| || || | ||||| || || | || || Sbjct 31630 CCGTACACGTCCAACATGTACAACCGCCGAGTGCTGGCTGGAGAGTTCACGATCGTCAAC 31689 Query 364867 AAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAG-CATGAAGAACTA 364925 |||||||| | ||||| || ||| | ||| | | || | | | | || ||| | Sbjct 31690 AAGTACCTGATGAAGGAGCTGATCGAGCTCGGCATCT-GGACGCCGGACGTGCGCAACCA 31748 Query 364926 TATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGG-ATTTCCAGAAGATCTGAAGC 364984 ||| | || | || || ||||||||| || ||| | || || | | ||| Sbjct 31749 GATCTTGAACGACAGCGGCTCCGTGCAGAAC-GTCAAGGCGATCCCGGACCACGTCAAGG 31807 Query 364985 CTATTTACAAAACCGTATGGGAAATTTCCATGC-GAA--CTCTCATTGATATGGCGGCCG 365041 | ||||| || || ||||| || || || ||| | | | || || |||||| Sbjct 31808 AGAAGTACAAGACGGTGTGGGAGAT---CAAGCAGAAGGCGGTGCTGGACCTGTCGGCCG 31864 Query 365042 ATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCT 365101 | |||||||| | || || ||||| |||||| | ||| | ||| | | || ||| Sbjct 31865 ACCGCGGTGCGTACATTTGCCAGAGTCAGTCGCTCAACATCCACATCGCCGACCCGACCA 31924 Query 365102 CCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 | |||||| || || ||||| ||||||| ||||| || || ||||| || Sbjct 31925 TCAGCAAGCTCACGTCGATGCACTTCTACGCCTGGAAGAAGGGGCTCAAGACCGG 31979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303326614063712