Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq926 188 7e-43 seq784 140 3e-28 seq147 107 2e-18 seq868 87.8 2e-12 >seq926 Length=67561 Score = 188 bits (208), Expect = 7e-43 Identities = 761/1173 (65%), Gaps = 48/1173 (4%) Strand=Plus/Minus Query 145030 CTTGATCAAGTCGTCAATTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACG 145089 || ||||| || | || | ||||| ||||||| | ||||| || |||| ||| || Sbjct 31716 CTCGATCAGCTCCTTCATCAGGTACTTGTTGACGATCGTGAACTCTCCAGCCAGCACTCG 31657 Query 145090 ACGCAAATACACGTTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGC 145149 || |||| ||| |||||| | || || | ||||||||| || || ||||| || || Sbjct 31656 GCGGTTGTACATGTTGGACGTGTACGGCTCGATAGACTCGTTGTTTCCAAGGATCTGGGC 31597 Query 145150 GGTCGTTGCGGTGGGCATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGAT 145209 || | || || |||||| ||||||| | || ||||| || |||||||| | | Sbjct 31596 CGTGGAAGCCGTCGGCATGGGGGCCACCAGCAGCGAGTTGCGGAGTCCGTGCTTGATCAC 31537 Query 145210 GTCTTCCTTTAGCGTACCCCAATCCCATAG---CGAAGTCGGCCTCACGTCCCACATGTC 145266 ||| ||||| |||||| |||| | ||| | ||| | ||| | ||| |||||||||| Sbjct 31536 GTCCTCCTTGAGCGTAGCCCAGTTCCACATACCCGACGACGGGGTGACGCCCCACATGTC 31477 Query 145267 GTACTGCAAAATGCCCTCGCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGT 145326 | |||| || ||||||| ||| ||||| ||| || || | ||| | || ||| Sbjct 31476 GAACTGGAAGATGCCCTTGCTAGCGGGCGAGCCCTGGAACGTCTCGTA--CGGGCCGAGT 31419 Query 145327 T--TTGGCGAGCTCGCAAC-TCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTG 145383 | ||||||| ||| || | || ||||| ||| |||| || || |||||| || | Sbjct 31418 TCCTTGGCGATCTC-CATCGACGTCTCCATGGCGGCGAAGTAGATGGTCTCGAAGATGTT 31360 Query 145384 CCTGTTGAGCAGCATCGCTTCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATC 145443 | |||||||| | || | ||||||||| ||| | || || | ||| || || Sbjct 31359 CTTGTTGAGCTCCCGGGCCTTCTCGCTCTCGAACGCGTAGTTCATGAGGATAAACGCGTC 31300 Query 145444 GGCGAGCCCCTGTATTCCCACGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGA 145503 ||||| ||||| | || | |||||||| || || ||||||| | | | ||| Sbjct 31299 CGCGAGGCCCTGGACGCCAATACCGATGGGGCGGTGACGCATGTTGGACTTGCGCGC--- 31243 Query 145504 CTCGAT---AGGATA-TCGATTACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCT 145559 |||||| || || | | | || |||||| | || || ||||| || || |||| Sbjct 31242 CTCGATCACGGGGTAGTAGTTGAC-GTCGATGACCTTGTTTAAGTTGCGGGTGACCACCT 31184 Query 145560 TTGTAATGTGCCGCAACTTTTCAAAGTCAAACCGAGCCTCGTCAACGACC--ACACAGCT 145617 | || | | |||||| | ||| || | || || |||| | | |||| Sbjct 31183 TCGTCACTTCATACAACTTCTGGTAGTTGAAAACTCCTTCCTCCACGAACTTAGGCAGC- 31125 Query 145618 ATTGACGGCGATCGACGCCAAATTACAAACTGCCGTCTCCT-CGGCGTCGCTGTATTGTA 145676 || | |||||||| || || || ||| ||| | ||||| || |||| | | Sbjct 31124 -------GCCACAGACGCCAAGTTGCACACAGCCACCTCGTCCGGCGACG-TGTACTCCA 31073 Query 145677 CGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCC 145736 | ||| ||| || ||||| | ||| || || || || | ||| || || | Sbjct 31072 TCACCTCACAGCATAAGTTGCTGGAGCGGATCGTGCCGAGGTTCTTCTGGTTCGACTTGC 31013 Query 145737 TGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGA 145796 |||| |||||||||||| | ||| | || | || ||||| | ||| | |||| | Sbjct 31012 GGTTGGCCGCGTCCTTGTACAACATAAAGGGCACTCCCGTCTCAATCTGGGCGTCCA--A 30955 Query 145797 TAAAACGGTGCA-AG-TCCTGCGCACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTA 145854 || || || || | ||| || | | || || ||| ||||| ||||| Sbjct 30954 TATGGCGAACCACAGCTGCTGGGCGTTGATCGTCTTGCGGGCGCGTCCCTCCGTCTCGTA 30895 Query 145855 TTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTT 145914 || ||||| |||| || || || |||| || | || || || || ||| Sbjct 30894 CTTTTCATAGAGGGCCTCGAATTCGTCGCCCCAGCACTCATAGAGTCCAGGGGCCTCGTT 30835 Query 145915 GGGACACATCAGCGA--CCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGC 145972 || || || || || ||| ||| ||||| | || | || ||| |||| ||| ||| Sbjct 30834 AGGGCA-AT-AGAGACTCCACTTGCCATTGGCTTCCACCCTCTTCATGAACAGATCAGGC 30777 Query 145973 ACCCACAGCGCGTACATCAAGTCGC--GCGCTTTGCAATCCTCAGCACCCATGTTTCGCT 146030 ||||| || ||||| | || ||||| |||| ||||| ||| | || || ||| Sbjct 30776 ACCCAAAGGGCGTAGAACAGGTCGCGAGCGCGGTGCAA--CTC-GTTGCCGTGGTTCTTA 30720 Query 146031 TCAAATT--AAGCACACTATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGC 146088 | | ||| || | | | | || |||||||| || || | ||||| ||||| || Sbjct 30719 CGGAGGTCCAAGAACTCGA-ACACATCTGCGTGCCAAGGCTCCAAATAGATGGCGAAGGA 30661 Query 146089 TCCTTTTCGTTTG---CCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCAC 146145 || || || ||| || ||||||||||||| || | ||| |||||| || |||| Sbjct 30660 GCCCTTACGCTTGCCTCCGCCCTGGTCCACGTACCGCGCGGTGTCGTTAAACACCCGCAG 30601 Query 146146 CATGGGCTCGACGCCGCTGGCTACGCCGTTCGT 146178 |||||| || ||| ||| ||||||||| Sbjct 30600 CATGGGGATGATGCCATTGGACGAGCCGTTCGT 30568 >seq784 Length=83642 Score = 140 bits (154), Expect = 3e-28 Identities = 171/232 (74%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | |||||||| | || | ||||||||||| ||||||||||| |||||| Sbjct 18786 CCACCACGAAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 18845 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 18846 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 18905 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| |||||||||| | || | | || | | ||| | | Sbjct 18906 ATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACG 18965 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACTT 131239 || | || | || || || || || || || ||||| |||||||| |||| Sbjct 18966 TCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT-ACTT 19016 >seq147 Length=128699 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| || | ||||| |||||| ||||||||||| ||| ||| Sbjct 64796 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 64855 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | |||||||||||| || ||||| || || ||||| |||||||||||||| | | Sbjct 64856 TCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 64915 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | | |||| | ||| | ||| | || | ||| || || || || || || || | Sbjct 64916 CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 64975 Query 131225 AAATCTGCATGA 131236 | |||||||||| Sbjct 64976 AGATCTGCATGA 64987 >seq868 Length=80962 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| ||||| | || | || |||||| || |||||||| || Sbjct 33827 CCACCACGCAGACGAAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAA 33886 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| ||||||||||| ||| |||| | ||||||||||| || ||| Sbjct 33887 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 33946 Query 131128 ATTCCT 131133 |||||| Sbjct 33947 ATTCCT 33952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472003265341440