Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1329 203 7e-47 seq1029 118 2e-21 seq952 105 1e-17 seq802 87.8 4e-12 >seq1329 Length=147112 Score = 203 bits (224), Expect = 7e-47 Identities = 662/1011 (65%), Gaps = 37/1011 (4%) Strand=Plus/Plus Query 279361 ACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACA 279420 |||| || ||||||||||| || ||||| | ||||||||| ||| |||| || | Sbjct 130600 ACTGCGAGTTCTCGCTCGCTTACGGTGGTATGATTCTGCTGAACAACGCCCGTCTTCGCC 130659 Query 279421 TCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAA 279480 ||||||||||| |||| || ||||| ||||||||| || |||||| || || | Sbjct 130660 TCAAGCGTGGCCACCGTTACGGTCTGTGCGGTCCCAACGGTTGTGGTAAGTCGACGCTGA 130719 Query 279481 TGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCATCTGAGGTAAGGACAG 279540 ||||||||||||| ||||| ||||| || || || || | | ||| | | ||| | Sbjct 130720 TGCGCGCCATTGCCAACGGCCAGCTCGAGGGCTTCCCCAGCAAGGACGAGCTGAAGACTG 130779 Query 279541 TGTATGTAGAGCACGACATCGACTCCTCTCTCTCGGATAGCACTGTGTTCGACTTCCTAA 279600 ||| || |||||| || | | | || | || || ||| | |||||| | Sbjct 130780 TGTTCGTCGAGCACAACCTGCAGGCTTCGGAGGCTGAGCTTACGGTGGTTGACTTCATCC 130839 Query 279601 CGTCTGACAATCAGGTTATGGAAATCAGCTCTCCTGAGGAAATCATCCAGAAACTGGAGG 279660 | ||| | | | | ||| || | ||| |||| | | || || || Sbjct 130840 TGATTGATGACGACCTGAAGGA---CACCCCTCGCAAGGAGGT--TGAGGACGCTCT-GG 130893 Query 279661 CCAATG--GTTTTGATGAAAGA-ATGCGTAATCTGCCAGTAGGTTCTCTGTCGGGTGGTT 279717 | ||| | || | || |||| || | | || || || || || ||||||| Sbjct 130894 CTGATGTCGGCTTCACCGCCGAGATGCAGGCTCAGGCTGTGGGCTCCCTTTCTGGTGGTT 130953 Query 279718 GGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATGTCCTACTGCTTG 279777 |||||||||| || | || | || || || || ||| || || | || ||||||| Sbjct 130954 GGAAGATGAAACTCGAGCTGTCGCGTGCTATGCTGCTGAAGGCTGACATTCTGCTGCTTG 131013 Query 279778 ATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGTCCTACCTAACCA 279837 ||||||| || |||||| |||| || ||||| |||||||| | | |||||| || | Sbjct 131014 ATGAGCCGACAAACCACTTGGATGTCAAGAACGTCGCCTGGCTTGAGAACTACCTGACGA 131073 Query 279838 GTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTCCTAGATGCCGTGT 279897 | || || ||| | ||| |||| || || ||||||||||||||||| || ||||| Sbjct 131074 GCGTGCCGACTGTCACCTCCATCATGGTGTCCCACGACTCTGGCTTCCTTGACAACGTGT 131133 Query 279898 GCTCTGCCATCATTCACTATGAG---CAAAATCTGAAGCTCTCCAAGCACATCGGCAACC 279954 | | |||||| ||||| ||| | || |||||| ||| |||| ||||||| Sbjct 131134 GTACCAACATCATCCACTACGAGACCCGTAAGCTGAAGATCTACAAG------GGCAACC 131187 Query 279955 TGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTACTATGACCTGAAGGACGCCA 280014 | ||| ||||| | || || ||||| |||||||| || ||| || | || Sbjct 131188 TTTCTCTCTTCGTTGAGCAGAAGCCCGAGGCCAAGGCCTACTACGAGCTGGAGTCGGACA 131247 Query 280015 CCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCATC-ACATCAAAGGATCGC 280073 || |||| ||||| ||||| || || || | | |||| | | ||| || || Sbjct 131248 ACGTGAAGTTCACGTTCCCGGAGCCTGGTTTCCTTGCTGACATCAAGAACAAGGGTAAGC 131307 Query 280074 GCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCCAATGG--CCCCAACATCTTC- 280130 | ||||| || | ||| | || || ||| |||| | | || Sbjct 131308 -CCATCATTCGTCTGACCAACTGCTCGTACCAGTACCC---TGGTACCCCGAAGCCGTCG 131363 Query 280131 AGCAGTGTCAACTCG--CAGGT---TTCTAT-GAACTCACGGATTGGTGTCATTGGACCC 280184 | || || |||| | || ||| | || | || || | ||| |||| ||| Sbjct 131364 ATCAACAACATCTCGGTGACGTGCGCTCTGTCGAGC---CGTATCGCTGTGCTTGGCCCC 131420 Query 280185 AATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCCACTGAG 280244 || ||||| |||||||| || || ||||| | ||||| || ||| || | || ||| Sbjct 131421 AACGGTGCCGGTAAGTCGACGCTGATCAAGATGCTGACGGGTGAGGTGGAGCCGAC-GAG 131479 Query 280245 GGGTC-CGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCTTTCCA 280303 |||| || |||||||| || |||||| | || ||||| ||||||||||||||||| Sbjct 131480 CGGTCAGGTGTGGAAGCACCCTTCCATGCGTTTCGCCTACGTGGCTCAGCACGCTTTCCA 131539 Query 280304 CCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCG 280354 |||||| ||| ||||| ||| ||| | ||||| ||||| |||||||| Sbjct 131540 CCACATTGAGTCGCACCTCGACGAGACGGCCAACCAGTACATCCAGTGGCG 131590 >seq1029 Length=318196 Score = 118 bits (130), Expect = 2e-21 Identities = 406/619 (66%), Gaps = 17/619 (3%) Strand=Plus/Minus Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAA-CTGTTGGTGCAGACCCTCG 251856 |||||||||| ||||||| ||||||| ||| | ||| || | || ||||| |||||| Sbjct 189439 CAGCTTGTTCACCAGCTTGGAGTACATGAGGCACGCGAAGTCCGT--GTGCATGCCCTCG 189382 Query 251857 TCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGC 251916 || || ||||| | |||||| || | | |||||||||| | | || || ||| ||||| Sbjct 189381 TCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCGTGAGGCCGCGCTTCTTGAGC 189322 Query 251917 CAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACA 251976 |||||||| | ||| || || || ||||| | | ||||| || | | | | Sbjct 189321 CAGAAGATCGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCCACGGTTGCGAACGTCAGC 189262 Query 251977 AGGCGCTCAGCAAACGACTTGTCCTGCG---ACAAGAACTTCTGTGCCCA-TGCTGCCTT 252032 | |||||| | ||||| | ||| | |||| | ||||| ||| || || Sbjct 189261 ACGCGCTCCGGGTACGACGACACTCGCGGGTCGCACCACTTGAGCGCCCAGTGC-GCTTT 189203 Query 252033 CTT-TCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGT 252091 ||| | || | | || || || ||||| ||| | || || | ||| | | | Sbjct 189202 CTTCTTCACACAC-GGAATCGTATCGATGGCACGCAGCAGGTGGTCCTTCTCCGTCGCAT 189144 Query 252092 CCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACA 252151 ||| |||| || |||| || || || |||| ||| || |||||| ||| || | Sbjct 189143 CCTTGATGTACGTGTCAATGAGCAGCGAATACACCTCTGAGTGGATGTTCTCGATGGCGA 189084 Query 252152 TCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTG 252211 ||||| || | ||||| || || || | ||||| || ||||| | | Sbjct 189083 TCTGGAAACCGTAGAAGCAGCGGGCCTCCGGTACCTGCACTTCATTGCTGAAGTTCATGG 189024 Query 252212 CAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGA 252271 | | |||||| |||| ||||| |||||| | || |||||| | || | | |||||||| Sbjct 189023 CCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGAAGAAGGCCAGCACGTGCTTGATGA 188964 Query 252272 AGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGGAA 252331 || ||||| | ||| | || || | |||||| | ||| || ||| | Sbjct 188963 AGAACCGCTCGTTGTCCGTCAGGTTCGC---CCAGTCCTTCAGGTCGTGCACCAGGTCCA 188907 Query 252332 CTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT-TGCGAACACATCAGGG 252390 || || |||||||||| | || | |||| ||||||||||| ||| |||| || | Sbjct 188906 GCTCCTCGGCCGTCCAGAACGAGGCCTCCGCTTTCTTGTACATCTGC-CACACGTCGTGC 188848 Query 252391 TACTTGATTGGGAA-AGCA 252408 | || ||| ||||| |||| Sbjct 188847 TCCTGGATCGGGAACAGCA 188829 >seq952 Length=187182 Score = 105 bits (116), Expect = 1e-17 Identities = 128/172 (74%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 218656 AAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAG 218715 ||||| || || || |||||||||| || || || | ||||||||||| |||||| Sbjct 135988 AAGGTGGCACAATTGGCTGGTTATGTGTCAGAGCACTCCGCGTACCATCACGGCGAGCAG 135929 Query 218716 AGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAAC 218775 ||| ||||||| || || |||||| ||||||| ||| || || |||||||| || Sbjct 135928 AGTTTGCAGGGCTGTATCGTCAACATGGCTCAGGACTTTGTCGGAAGCAACAACATCCAC 135869 Query 218776 TTGCTGCTCCCCAA-CGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGAT 218826 | ||| || |||| ||||||||| ||| | ||| | |||| || |||||| Sbjct 135868 CTCCTG-TCGCCAATCGGTCAGTTCGGTACGCGTTTGATGGGCGGCAAGGAT 135818 >seq802 Length=79155 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 280713 ATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAA 280772 || |||||||| || || |||||||||||||| || ||||||| || || ||||| | Sbjct 26474 ATCCGCGGTCTCTCGGGCGGCCAGAAGGTCAAGCTCGTCATCGCTGCTGCCATGTGGAAC 26415 Query 280773 CACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGC 280832 | || ||| || | || || || ||||| || ||||| ||||||||| | |||||| Sbjct 26414 CGTCCGCACTTGTTGGTGCTGGATGAGCCGACGAACTACTTGGACCGCGCGGCGCTGGGC 26355 Query 280833 GCTCTG 280838 || ||| Sbjct 26354 GCGCTG 26349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027815518639056