Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1329 188 1e-42 seq708 188 1e-42 seq1029 167 4e-36 seq154 113 8e-20 seq802 102 2e-16 seq952 86.0 1e-11 >seq1329 Length=147112 Score = 188 bits (208), Expect = 1e-42 Identities = 660/1017 (65%), Gaps = 29/1017 (3%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||||||||| ||| ||| ||||| |||||| ||||||||||| Sbjct 131590 CGCCACTGGATGTACTGGTTGGCCGTCTCGTCGAGGTGCGACTCAATGTGGTGGAAAGCG 131531 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| || ||||| || | |||||| || ||||||||||| || | ||||| Sbjct 131530 TGCTGAGCCACGTAGGCGAAACGCATGGAAGGGTGCTTCCACACCTGACCGCTCGTCGGC 131471 Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160 | |||| || || || | |||||| ||||| | ||| || ||||| |||||||||| | Sbjct 131470 TCCACCTCACCCGTCAGCATCTTGATCAGCGTCGACTTACCGGCACCGTTGGGGCCAAGC 131411 Query 225161 ACGCCAATCCGGGATGACATTGC-AAC--CTGCGAGTTCACGTTGCT-GAAGATCTCAGG 225216 || | || ||| |||| || || | |||| | |||| | || | || || Sbjct 131410 ACAGCGATACGGCTCGACAGAGCGCACGTCACCGAGATGTTGTTGATCGACGGCTTCGGG 131351 Query 225217 G--CCAGTTTGGTA-AGCAAAGGCCACGCCACGCAGCTTCATGATGGCACGGTCCTTGGA 225273 | |||| |||| | | | || | ||| ||||||| ||||| Sbjct 131350 GTACCAG---GGTACTGGTACGAGCA-GTTGGTCAGACGAATGATGGGCTTACCCTTGTT 131295 Query 225274 AGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTC---CTT 225330 | || | | ||||| || ||||| |||||| ||| |||| ||| || Sbjct 131294 CTTGATGTCAGCAAGGAAACCAGGCTCCGGGAACGTGAACT---TCACGTTGTCCGACTC 131238 Query 225331 CAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCCGAG 225390 ||| |||||||| | |||||||| || | ||||| ||| ||||| || Sbjct 131237 CAGCTCGTAGTAGGCCTTGGCCTCGGGCTTCTGCTCAACGAAGAGAGAAAGGTTGCCCTT 131178 Query 225391 GTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCAAG 225450 || || | ||||| || ||||||| || | || | ||||| |||||| Sbjct 131177 GTAGATCTTCAGCTTACGG---GTCTCGTAGTGGATGATGTTGGTACACACGTTGTCAAG 131121 Query 225451 GAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGCGT 225510 ||||||||||||||||||||| |||||||| | || ||| || || | | |||| | Sbjct 131120 GAAGCCAGAGTCGTGGGACACCATGATGGAGGTGACAGTCGGCACGCTCGTCAGGTAGTT 131061 Query 225511 GATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGAT 225570 ||||| || ||||| |||| |||| ||||||||| || || || || ||||| || Sbjct 131060 CTCAAGCCAGGCGACGTTCTTGACATCCAAGTGGTTTGTCGGCTCATCAAGCAGCAGAAT 131001 Query 225571 GTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAG 225630 |||||| | | || || || |||| || || ||||| ||||| || || || || Sbjct 131000 GTCAGCCTTCAGCAGCATAGCACGCGACAGCTCGAGTTTCATCTTCCAACCACCAGAAAG 130941 Query 225631 GGAGCCGATTGAAACAGAGTGCTTAGCTTCGTCAAAGCCGTACTCCAG---GAGCGTCTG 225687 |||||| | | || ||| | | || |||||| || ||| ||||||| Sbjct 130940 GGAGCCCACAGCCTGAGCCTGCATCTCGGCGGTGAAGCCG-ACATCAGCCAGAGCGTC-- 130884 Query 225688 GATAATGCGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGAGGTAATCATA 225747 || || | ||| | || | | || | || | || | | ||| Sbjct 130883 CTCAACCTCCTTGCGAGGGGTG---TCCTTCAGGTCGTCATCAATCAGGATGAAGTCAAC 130827 Query 225748 TACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTCCGGAGCTG 225807 || || | || | | || || | | || ||| || ||| |||| ||| |||| Sbjct 130826 CACCGTAAGCTCAGCCTCCGAAGCCTGCAGGTTGTGCTCGACGAACACAGTCTTCAGCTC 130767 Query 225808 AGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTT 225867 |||||||||||| |||||||| || ||||| || || | ||| || ||| Sbjct 130766 GTCCTTGCTGGGGAAGCCCTCGAGCTGGCCGTTGGCAATGGCGCGCATCAGCGTCGACTT 130707 Query 225868 GCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGT 225927 || |||||||||||| || |||||| | | || ||||||| | || || | Sbjct 130706 ACCACAACCGTTGGGACCGCACAGACCGTAACGGTGGCCACGCTTGAGGCGAAGACGGGC 130647 Query 225928 GGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTC 225984 | |||||| || ||| | ||||| || || || ||||||||||| | ||| ||||| Sbjct 130646 GTTGTTCAGCAGAATCATACCACCGTAAGCGAGCGAGAACTCGCAGTTGCAAAGGTC 130590 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 224449 GTGAGAAATAACTACTACACCGCCGCCGAATGACTCAAGGGCGGATGAAAGCGCGCCAAG 224508 ||||| ||| | || ||||| ||| ||| || | ||| || | ||| || ||||| Sbjct 132134 GTGAGTAATCATGACCACACCACCGTTGAAGTCCTTGATGGCCGAAGCAAGGGCACCAAG 132075 Query 224509 CGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTGGGGGCACTGCCA 224568 ||| |||||||||||| |||||||||||||||| || | | | ||| ||| | |||| Sbjct 132074 CGAGTCGCGGTCAAGGTAGTTCGTCGGCTCATCAAGCACAAGGATGTGCGGGTTCAGCCA 132015 Query 224569 CAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCCGCGGATCCGCGA 224628 || || ||| | | ||| | ||||||||||||||| || || || || || || ||||| Sbjct 132014 CATAGCGGCAGCGAGCACGACCTTCACCTTCTGACCACCGGACAGACCACGCATGCGCGA 131955 Query 224629 GTGAGTCGTGAATTCGG 224645 ||| || ||| |||| Sbjct 131954 GTGGGTACCGAACTCGG 131938 >seq708 Length=102546 Score = 188 bits (208), Expect = 1e-42 Identities = 404/591 (68%), Gaps = 16/591 (3%) Strand=Plus/Plus Query 268211 CCAGTTGCAATCACAAAGTCCTCTGGCTCAGGAGACTGGAGCATTTTCCACATTGCTTCG 268270 ||||| |||| ||||| || || || | | || |||||| |||||| || Sbjct 40473 CCAGTAGCAACAACAAAATCATCCGGAGTATCATGTTGAAGCATTCGCCACATGCACTCC 40532 Query 268271 ACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGGAACAGGCAT 268330 || ||||| || || |||||||| || || || ||||| | |||||| | || ||||| Sbjct 40533 ACGTAGTCGCGAGCGTGGCCCCAGTCTCGTTTCGCGTCGAGGTTCCCCACAAAGAGGCAC 40592 Query 268331 TTCTGCTTGCCGAGCTTCACG----CGTGCAAGACCGCGAGTGATTTTTCGGGTCACGAA 268386 |||| | || ||| ||| || ||| | | || ||||| || || || ||||| Sbjct 40593 TTCTCAATACC-AGC---ACGAATACGCACAACAGCTCGGGTGATCTTGCGAGTGACGAA 40648 Query 268387 CGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCAC-GCGAACATGC 268445 || |||||| | ||||| ||||||||||| | || ||||| ||| || |||||| Sbjct 40649 GGTTGGTCCACGTCGGGGGCTTTCGTGGTTGAATAAAATCCCGTT-CACGGCAAACATGG 40707 Query 268446 CATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACG 268505 | || || || || | ||||||||| |||| | || ||| ||| || || |||| | Sbjct 40708 CGTAGGCTTCGCGATGGTTCACGACACTCCAAAAAGCGAACTGCTTCGCGACACCGTAGG 40767 Query 268506 GAGAACGTGGATGGAAGGGCGTCGTGATC-TTTTGAGGGATTTCTCGGACTTTGCCAAAG 268564 | || || |||||||| || ||| | || | || || | |||| || ||||| | Sbjct 40768 GTGATCGCGGATGGAACGGAGTC-TCCTCGTCCTGCGGTGTGGCTCGCACCTTGCCGTAC 40826 Query 268565 AGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGATTCGGATT 268624 | || |||||||||||||||||| || | | ||| || || ||| | || | Sbjct 40827 AATTCACTCGTCGATGCTTGGTAGAACCGCGTCGAGTGTTCCAGTCCACAGGTGCGCA-A 40885 Query 268625 GCCT-CGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGGCATCTC 268683 || | ||||| || || | |||| ||||| || |||||||| ||||| | || || Sbjct 40886 GCATGTGAGCAGGCGGAGTGCACCCACTCCATCGACATCCGCTGTGTACTCGGCCAGTTC 40945 Query 268684 GAATGACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAACCTCATCCGGTTTGACCTG 268743 ||| || |||| ||||||| | || |||||||| || || |||| ||| || | Sbjct 40946 GAAGGAGACCTTGACATGGGACATCGCCCCCAGGTTGTACACTTCATTCGGGCGTACGCG 41005 Query 268744 CTGCACGATCT-TCACGAGGTTCGTTGAGTCGGTGAGGTCTCCGTAGTGCA 268793 ||| |||| ||| | |||| | ||||||||| || |||||||||| Sbjct 41006 TGCCACAATCTGACAC-AAATTCGACGCGTCGGTGAGATCCCCGTAGTGCA 41055 >seq1029 Length=318196 Score = 167 bits (184), Expect = 4e-36 Identities = 502/757 (66%), Gaps = 26/757 (3%) Strand=Plus/Minus Query 10071 CGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTCATGCCAATC-ATGCG 10129 ||||| ||||||||||||||||| |||| ||| || ||||||||||||| ||| | | Sbjct 189576 CGGTCGGCCACGAACTCGATGTATTGGCACATGAGCGCCGAGTTCATGCCGATCGACTCC 189517 Query 10130 GCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGCTTCCTCGACGATGCT 10189 ||||| | | ||| | | ||| || | ||| | | ||| | || ||||| || Sbjct 189516 ACAGGG-AGCGAGTCACGCACGAACTCGTGCTCGATCGTCACCCCGTCGCGCACGAT-CT 189459 Query 10190 CTTTACCACG--TCAAGGGACAGCTTGTTCTCGAGCTTCGAATACAGGAGCTCTCCAAAC 10247 | | | || || || |||||||||| | ||||| || |||| ||| | || Sbjct 189458 CGTGCACGCGGCTCCCCGG-CAGCTTGTTCACCAGCTTGGAGTACATGAGGCACGCGAAG 189400 Query 10248 TGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACCCAGACCGGGCATG 10307 | | ||| | ||||||||| |||||||| | |||||| || || | ||| || ||| || Sbjct 189399 TCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCGTG 189340 Query 10308 AGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGAACAGAAGA--CCCT 10365 || || || || |||||||| || | ||||||||| || ||||| ||||| |||| Sbjct 189339 AGGCCGCGCTTCTTGAGCCAGAAGATCGAGCAGAACGAGCCCGAGAA--GAAGATGCCCT 189282 Query 10366 CCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGAG--CGGTCGCGCGAAA-AGTATT 10422 ||||| | | | | | |||||| | | | || | ||||| | | | | Sbjct 189281 CCACGGTTGCGAACGTCAGCACGCGCTCCGGGTACGACGACACTCGCGGGTCGCACCACT 189222 Query 10423 TCGAG-GCCCA---CGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCGATAGCCTCGAAG 10478 | ||| ||||| |||| |||||| ||| || ||||| ||||| || || || Sbjct 189221 T-GAGCGCCCAGTGCGCTTTCTTCTT---CACACACGGAATCGTATCGATGGCA-CGCAG 189167 Query 10479 -AGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGCAGGGAGTATTGCTC 10537 || | || ||| ||| | |||| || | |||| |||||| || || ||| Sbjct 189166 CAGGTGGTCCTTCTCCGTCGCATCCTTGATGTACGTGTCAATGAGCAGCGAATACACCTC 189107 Query 10538 GCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACATACGTGCCGAGGGGTCCGT 10597 ||||| | |||| || |||| || ||||||| || ||| || || Sbjct 189106 TGAGTGGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCAGCGGGCCTCCGGTACCTG 189047 Query 10598 GACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCCATCGCTGCCTGCAAA 10657 ||||| | | ||||| || ||||||||| |||| ||||| |||||| | || || Sbjct 189046 CACTTCATTGCTGAAGTTCATGGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGAA 188987 Query 10658 GAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCAGTTTTTCACGCCAGTC 10717 |||| | || | ||||||||||||| ||||| | || |||| || | |||||| Sbjct 188986 GAAGGCCAGCACGTGCTTGATGAAGAACCGCTCGTTGTCCGTCAGGTTCGC---CCAGTC 188930 Query 10718 TACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTT 10777 || || || || | | |||||| | |||||||| | ||| | || ||||| Sbjct 188929 CTTCAGGTCGTGCACCAGGTCCAGCTCCTCGGCCGTCCAGAACGAGGCCTCCGCTTTCTT 188870 Query 10778 GTACATCTGGAAAATGTCGGGGTACCGGATGGGGAAC 10814 ||||||||| | | |||| | | | |||| |||||| Sbjct 188869 GTACATCTGCCACACGTCGTGCTCCTGGATCGGGAAC 188833 >seq154 Length=10592 Score = 113 bits (124), Expect = 8e-20 Identities = 265/397 (67%), Gaps = 16/397 (4%) Strand=Plus/Minus Query 173082 ACGTCCTGAAGCAGGAAAAAATTGACACGATTATGCACTTTGCTGCGCAGACCCATGTGG 173141 ||||||| ||| ||| || ||||| || |||||||| ||||||||| | || |||| Sbjct 939 ACGTCCTCAAGACGGAGCGCATCGACACCATCATGCACTTCGCTGCGCAGTCGCACGTGG 880 Query 173142 ACAACTCGTTCGGTAACTCGCTGGCATTTACCATGAACAACGTCTACGGGACCCACGTTC 173201 ||||||||||||| |||||| | | || | || || ||| || || || ||||| | Sbjct 879 ACAACTCGTTCGGGAACTCGATCGAGTTCAGCAAGACCAATATCCTGGGCACGCACGTGC 820 Query 173202 TCCTGGAATGCGCGAGGCTCTATGGCGGTGTCCAGCGGTTCATCAATGTGTCTACCGACG 173261 | ||||| |||||||| || || ||| | |||| ||| | ||| || |||| Sbjct 819 TGCTGGAGGCTGCGAGGCTGCAT---GGGGTCAAAAGGTTTATCCACGTGAGCACGGACG 763 Query 173262 AAGTATACGGCGAGAGCAGTCTGGGCAAAAAAGAAGGCCTCGATGAAC----ACTCGTCC 173317 | || ||||| || |||| | | | ||| |||||| | || Sbjct 762 AGGTGTACGGAGAAGGCAGACCCG-------ACTCGGCGCCGATGACCGAGGACCATGTG 710 Query 173318 CTCGAGCCAACAAACCCATATGCAGCAGCCAAGGCTGGTGCCGAAATGATGG-CACGTGC 173376 ||||| || || |||||||| || || | |||||||| || || | ||| || | || Sbjct 709 CTCGAACCCACCAACCCATACGCGGCCACGAAGGCTGGCGCGGAGTTCCTGGTCAAGAGC 650 Query 173377 ATATCACACATCGTACAAGCTACCAGTCATCGTGACGCGCGGCAACAATGTGTATGGCCC 173436 | ||| |||| | || || ||| | ||| | ||||||| ||||| || || Sbjct 649 -TTCCACCGCTCGTTCGGTCTCCCGACCATTATCACGAGGAGCAACAACGTGTACGGACC 591 Query 173437 GCATCAGTTCCCCGAAAAAATGATCCCAAAATTTATT 173473 ||| |||| |||||| || | ||||| || || ||| Sbjct 590 GCACCAGTACCCCGAGAAGCTCATCCCCAAGTTCATT 554 >seq802 Length=79155 Score = 102 bits (112), Expect = 2e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 224498 AGCGCGCCAAGCGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTGG 224557 |||||||| |||| | ||||||| | | ||||||||||||||||||| | | | ||| Sbjct 26350 AGCGCGCCCAGCGCCGCGCGGTCCAAGTAGTTCGTCGGCTCATCCAGCACCAACAAGTGC 26409 Query 224558 GGGCACTGCCACAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCCG 224617 || | | ||||| ||| ||| | | || ||||| |||||||| ||||| ||||| ||| Sbjct 26410 GGACGGTTCCACATGGCAGCAGCGATGACGAGCTTGACCTTCTGGCCGCCCGAGAGACCG 26469 Query 224618 CGGATC 224623 |||||| Sbjct 26470 CGGATC 26475 Score = 84.2 bits (92), Expect = 4e-11 Identities = 135/189 (71%), Gaps = 5/189 (3%) Strand=Plus/Plus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||| ||||| | || | |||| ||||| ||||||| |||||||| | Sbjct 26839 CGCCACTGGAAGTACTCGACCGGACTGCTGTCGAGGTGCTTCTCAACGTGGTGGAACGAG 26898 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| || |||||||||| |||| | | | |||||||| | | |||| | ||||| Sbjct 26899 TGCTGCGCCACGTACGCCAGACGCACGGCGTGGTGCTTCCAGAAGGTGCCC-GTGTCGGG 26957 Query 225101 TGTGCCTCGCCGGT--GAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAA 225158 | | || || | ||| | |||||||||||| | ||| || || || ||| || | Sbjct 26958 CGA-CGTCTCCTGCACGAGCATCTTGATGAGCGTCGACTTACCGGCGCCGTTGACACCGA 27016 Query 225159 TCAC-GCCA 225166 |||| |||| Sbjct 27017 TCACAGCCA 27025 >seq952 Length=187182 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 178021 TCTCCACATCAAACTTCTTCGAAAAGATGTTGGTGAGCTTTGAACCGTATCCATTCCTGC 178080 |||| || | |||| ||||| |||||||||| ||||| | ||||| || || | || Sbjct 137889 TCTCGACCACGAACTCGTTCGAGAAGATGTTGGCCAGCTTGGCGCCGTAGCCGTTGCGGC 137948 Query 178081 CTGCGCCAGTCCTCTCCTGGGCATCATCAAAGTTCTCGCCCGTGAGGAGGTGGCCGAAGA 178140 | | ||| ||| || || || ||||| ||||||||| ||||||||||||| Sbjct 137949 CGCCCGTGGTCTTCTTCTTCTTGTCGTCGAAGTTGCTGCCCGTGAGCAGGTGGCCGAAGA 138008 Query 178141 TGAGCTCGGGCACATAG 178157 ||||||||||||| ||| Sbjct 138009 TGAGCTCGGGCACGTAG 138025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921603783227520