Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq926 358 1e-93 seq1029 324 3e-83 >seq926 Length=67561 Score = 358 bits (396), Expect = 1e-93 Identities = 977/1487 (66%), Gaps = 62/1487 (4%) Strand=Plus/Minus Query 243775 CAGGTAGTACATGCCGGTCTTGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAG 243834 || ||||||||||||||||||||| || | |||||||| || |||||| | ||| || Sbjct 31992 CATGTAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATCGACGTGAG 31933 Query 243835 CTTCTTCATCTTGAGCTTTGGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTG 243894 ||| | || | |||||| | | || |||||| ||||| ||||| Sbjct 31932 CTTGCTGATGGTC------GGGTCGGCGATGTG------GATGTTGAGCGACTGACTCTG 31885 Query 243895 GTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATA 243954 | | | | | | || || || | || | | | ||||||| ||||| | Sbjct 31884 GCAAATGTACGCACCGCGGTCGGCCGACAGGTCCAGCACCGCCTTCTGCTTGATCTCCCA 31825 Query 243955 CGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCC 244014 | |||||||||| | ||||| ||| || |||| | | | || ||||||||| ||||| Sbjct 31824 CACCGTCTTGTACTTCTCCTTGACGTGGTCCGGGATCGCCTTGACGTTCTGCACGGAGCC 31765 Query 244015 CTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTC---CAG 244071 ||| | | || |||| |||||| || |||| | ||| | |||| ||| Sbjct 31764 GCTGTCGTTCAAGATCTGGTTGCGCACGTCCGGCGTCCAGATGCCGA---GCTCGATCAG 31708 Query 244072 CGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTA 244131 | ||| | ||||| | |||| || | | |||||||| | |||||| ||||| | ||| Sbjct 31707 CTCCTTCATCAGGTACTTGTTGACGATCGTGAACTCTCCAGCCAGCACTCGGCGGTTGTA 31648 Query 244132 GAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGC 244191 | |||| || ||||||||| ||| |||| || || ||||| |||||| || Sbjct 31647 CATGTTGGACGTGTACGGCTCGATAGACTCGTTGTTTCCAAGGATCTGGGCCGTGGAAGC 31588 Query 244192 AGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATG-CGGAGTC 244250 ||||||||||| | ||||||||| ||| | | |||||| | ||| || || Sbjct 31587 CGTCGGCATGGGGGCCACCAGCAGCGAGTTGCGGAGTCCGTGCTT---GATCACGTCCTC 31531 Query 244251 --TGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTC 244308 ||||| ||||| |||||| ||||| | || | | || |||||||||||| Sbjct 31530 CTTGAGCGTAGCCCAGTTCCACATACCCGA-----CGACGGGGT-GACGCCCCACATGTC 31477 Query 244309 AAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCG 244368 ||||| | | |||||||| |||| ||||| | | ||| ||| || ||| Sbjct 31476 GAACTGGAAGATGCCCTTGCTAGCGGGCGAGCCCTGGAACGTCTCGTACGGGCCGAGTTC 31417 Query 244369 CTGGGCCAGCTTACAGCT-CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCT 244427 || ||| | || || | | || | ||||||| ||||||||||||||||||| ||| Sbjct 31416 CTTGGCGATCTC-CATCGACGTCTCCATGGCGGCGAAGTAGATGGTCTCGAAGATGTTCT 31358 Query 244428 TGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGG 244487 |||| | || |||||||| ||| ||| | | | ||| | || || |||| | Sbjct 31357 TGTTGAGCTCCCGGGCCTTCTCGCTCTCGAACGCGTAGTTCATGAGGATAAACGCGTCCG 31298 Query 244488 CCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGA---GCGCATGGCTT 244544 | || ||||| ||||| || |||||||| | ||| ||| ||||||| |||| || | Sbjct 31297 CGAGGCCCTGGACGCCAATACCGATGGGGCGGTGACGCATGTTGGACTTGCGC---GCCT 31241 Query 244545 CGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCA--TGCG 244602 || ||||||||| ||||| ||||||| |||||||| | ||||||||||| || | || Sbjct 31240 CGATCACGGGGTAGTAGTTGACGTCGATGACCTTGTTTAAGTTGCGGGTGACCACCTTCG 31181 Query 244603 GACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCT 244662 || || || | ||| ||| | | | |||| |||| Sbjct 31180 --TCACTTCATACAACTTCTGGTAGTTGAAAAC-------TCCT------------TCCT 31142 Query 244663 -CACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGG 244721 ||| |||| || || || |||| |||||| || |||||||| |||| | Sbjct 31141 CCACGAACTTAGGCAGCGCCACAGACGCCAAGTTGCACACAGCCACCTCGTCCGGCGACG 31082 Query 244722 TGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGAT 244781 |||||| | | ||| ||| | ||| ||| | ||| ||||| |||| || || | Sbjct 31081 TGTACTCCATCACCTCACAGCATAAGTTGCTGGAGCGGATCGTGCCGAGGTTCTTCTGGT 31022 Query 244782 TGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGG 244841 | |||||| |||| ||||||||||| | ||| |||||| | || ||||| | ||||| Sbjct 31021 TCGACTTGCGGTTGGCCGCGTCCTTGTACAACATAAAGGGCACTCCCGTCTCAATCTGGG 30962 Query 244842 CGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTG 244901 || | | | | | ||| || | | || |||| |||| |||| || ||||| | Sbjct 30961 CGTCCAATATGGCGAACCACAGCTGCTGGGCGTTGATCGTCTTGCGGGCGCGTCCCTCCG 30902 Query 244902 CCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGC 244961 |||||| || ||||||||||| ||| ||||||| ||| | || || ||| Sbjct 30901 TCTCGTACTTTTCATAGAGGGCCTCGAATTCGTCGCCCCAGCACTCATAGAGTCCAGGGG 30842 Query 244962 ACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGT 245021 | ||||| ||||||||||| ||| | | | ||||||| |||||| || | Sbjct 30841 CCTCGTTAGGGCAATAGAGACTCCACTTGCCATTGGCTTCCACCCTCTTCATGAACAGAT 30782 Query 245022 CGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCT 245081 | || | ||| ||||| | ||| ||||| | | | ||| || ||| ||||| Sbjct 30781 CAGGCACCCAAAGGGCGTAGAACAGGTCGCGAGCGCGGTGCAACTCGTTGCCGTGGTTCT 30722 Query 245082 TCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGG 245141 | | || ||||| || || || || || ||||||| ||||||| |||| |||| || Sbjct 30721 TACGGAGGTCCAAGAACTCGAACACATCTGCGTGCCAAGGCTCCAAATAGATGGCGAAGG 30662 Query 245142 CGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCA 245201 ||| |||||| || ||||||||||| || | || |||| || | |||| Sbjct 30661 AGCCCTTACGCTTGCCTCCGCCCTGGTCCACGTACCGCGCGGTGTCGTTAAACACCCGCA 30602 Query 245202 GGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAG 245248 | | || | ||||| || || |||||| ||||| ||||||| Sbjct 30601 GCATGGGGATGATGCCATTGGACGAGCCGTTCGTGCCTCGGATGTAG 30555 >seq1029 Length=318196 Score = 324 bits (358), Expect = 3e-83 Identities = 580/832 (70%), Gaps = 34/832 (4%) Strand=Plus/Plus Query 42229 GCGAGCTG---TTTGAGCCGCTCCTGGCGCCGAGCAACTCCA---GGTTCACCCTGGACG 42282 |||||||| | |||||| |||||| |||| ||| | | ||||| ||| | Sbjct 188781 GCGAGCTGCAGTCGGAGCCGTTCCTGGT--CGAG-AACCCGAACCGGTTCGTGCTGTTCC 188837 Query 42283 TGATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCG 42342 |||| || | || ||| | ||| ||||||||||| ||| || ||| |||||| | Sbjct 188838 CGATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAAGCGGAGGCCTCGTTCTGGACGG 188897 Query 42343 CCGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAA 42402 |||||||| | ||||||| | ||| | | ||||| | ||| | || ||||| Sbjct 188898 CCGAGGAGCTGGACCTGGTGCACGACCTGAAGGACTGGGCGAACCTGACGGACAACGAGC 188957 Query 42403 AGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGA 42462 ||| ||| |||| || | |||||||||||||| ||| |||||||| || || |||| Sbjct 188958 GGTTCTTCATCAAGCACGTGCTGGCCTTCTTCGCTGCCAGCGACGGCATCGTGAACGAGA 189017 Query 42463 ACCTGGCCACCAGGTTCATGAAAGAGGTGCA-GTACTTTGAGGCGCGCTGCTTCTACGGC 42521 ||||||||| | |||| || || ||||| |||| ||||| |||||||||||||| Sbjct 189018 ACCTGGCCATGAACTTCAGCAATGAAGTGCAGGTAC-CGGAGGCCCGCTGCTTCTACGGT 189076 Query 42522 TTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACG 42578 |||||||| ||||| |||||| | ||||| |||||||| | ||||||| ||||| Sbjct 189077 TTCCAGATCGCCATCGAGAACATCCACTCAGAGGTGTATTC---GCTGCTCATTGACACG 189133 Query 42579 TACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGC 42638 |||||| |||| | ||| || ||| | ||||| || ||||| || || Sbjct 189134 TACATCAAGGATGCGACGGAGAAGGACCACCTGCTGCGTGCCATCGATACGATTCCGTGT 189193 Query 42639 ATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGA-----GAGTCCCGACGCAACGT 42693 | |||||||| ||| ||||||||||||| ||| ||| |||| || || | | Sbjct 189194 GTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGAGTGTCGTCGTACC-- 189251 Query 42694 TCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCG 42753 || ||| | || | | || | |||| ||||||||||||||||||||| | ||| Sbjct 189252 -CG--GAGCGCGTGCTGACGTTCGCAACCGTGGAGGGCATCTTCTTCTCGGGCTCGTTCT 189308 Query 42754 CCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAA 42812 ||| ||||||||||||||| || || || | ||| || || | |||||||||||| Sbjct 189309 GCTCGATCTTCTGGCTCAAGAAGCGCGGCCTC-ACGCCTGGCCTGAGCTTCTCGAACGAG 189367 Query 42813 CTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCAC 42872 || |||||| | |||||||| |||| | |||||| || |||||| ||| ||| | | Sbjct 189368 CTGATCAGCCGTGACGAGGGCATGCACACGGACTTCGCGTGCCTCATGTACTC---CAAG 189424 Query 42873 CTCAGGCACAAGCCCTCGAAGGAG-CGGGTCCGGGCCATCATCACGGAGGCCGTGGAGAT 42931 || | |||||| || |||| || || | | ||| | || | ||| ||| Sbjct 189425 CTGGTGAACAAGCTGCCG-GGGAGCCGCGTGCACGAGATCGTGCGCGACGGGGTGACGAT 189483 Query 42932 CGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCT 42991 |||| | |||||| | | ||||| || ||| | ||||||||||| | || Sbjct 189484 CGAGCACGAGTTCGTGCGTGACTCGCTCCCTGTGGAGTCGATCGGCATGAACTCGGCGCT 189543 Query 42992 CATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGT 43043 ||||||| | |||||| ||| ||| ||||||| ||| |||||| | ||||| Sbjct 189544 CATGTGCCAATACATCGAGTTCGTGGCCGACCGTCTGCTGTGCTCGCTGGGT 189595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944320124348160