Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq868 96.9 3e-15 seq1068 87.8 1e-12 seq784 86.0 5e-12 >seq868 Length=80962 Score = 96.9 bits (106), Expect = 3e-15 Identities = 92/115 (80%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || |||||||| || ||||||||||||||||| |||||||| || | Sbjct 33826 ACCACCACGCAGACGAAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCG- 33884 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || || |||| |||| ||||||||||| || |||||||||||||| || Sbjct 33885 AAAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 33939 >seq1068 Length=45886 Score = 87.8 bits (96), Expect = 1e-12 Identities = 190/277 (69%), Gaps = 8/277 (3%) Strand=Plus/Plus Query 39936 GCCGCGGGCATGGACCTGAGGAGCGCATACGACTACGTGATTCCTCGCAA-CGACCGAAT 39994 |||||||| |||||||| | || |||||| |||||| || ||| || | || Sbjct 19911 GCCGCGGGTCTGGACCTGTCGGCTGCTTACGACGCCGTGATCCC-CGCGGGCGGC--AAG 19967 Query 39995 G--CTGGTGAAGACGGACATTGCTCTACAAC-TACCCAAAGAGTGCTACGGTAGAATAGC 40051 | || || ||||||||| | | || | | ||||| | | ||||||| | | || Sbjct 19968 GGCCTCGTCAAGACGGACCTGG-TCATCGCCGTACCCGACGGCTGCTACGCGCGCGTGGC 20026 Query 40052 GCCTCGGTCCGGACTGGCGCTGAAGCACGGTATCGACATTTCGGCCGGCGTCATAGATTC 40111 ||| || |||||||| ||||| ||| | ||||||| |||||||| || || | Sbjct 20027 GCCGCGCTCCGGACTCGCGCTCAAGAAGTTCATCGACACGGGCGCCGGCGTGATCGACGC 20086 Query 40112 TGACTACACGGGCAACGTGGGCGTGGTGATGGTGAACAACGGAGACGAGGCCTTTGTGGT 40171 |||||| ||||||||||||||| | || | ||| ||| | ||||| ||| || Sbjct 20087 CGACTACCGCGGCAACGTGGGCGTGATCCTGTTCAACCACGCGGCCGAGGACTTCCCCGT 20146 Query 40172 GCTTCGAGGAGACCGCATCGCCCAGCTCATACTGGAG 40208 || ||||||||| | || |||||||| || ||| Sbjct 20147 CAAGCGCGGAGACCGCGTGGCGCAGCTCATCCTCGAG 20183 >seq784 Length=83642 Score = 86.0 bits (94), Expect = 5e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || ||||||||||| || ||||| |||||||||||||||||| || || | || || Sbjct 18795 AGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTC-GCTCAGCGTGCG 18853 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 |||| || | |||||||| || || ||||| |||||||| || ||| | || ||| Sbjct 18854 ACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTC 18913 Query 34029 TTTGTCCATAATTTTTTGCTT 34049 |||||| || || ||||| Sbjct 18914 CTTGTCCTGGATCTTCTGCTT 18934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397054579856032