Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1329 116 8e-21 seq952 93.3 9e-14 >seq1329 Length=147112 Score = 116 bits (128), Expect = 8e-21 Identities = 658/1040 (63%), Gaps = 43/1040 (4%) Strand=Plus/Minus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||| |||||||| ||||||| ||||| |||||||||| ||| ||| || Sbjct 131615 CTCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTCTCGTCGAG 131556 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 || ||| |||||||||||||| ||||| |||||||| || | |||||| || || Sbjct 131555 GTGCGACTCAATGTGGTGGAAAGCGTGCTGAGCCACGTAGGCGAAACGCATGGAAGGGTG 131496 Query 333434 CTTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCT 333493 |||||| || ||| | || | |||| | ||||| |||| ||| || || || Sbjct 131495 CTTCCACACCTGACCGCTCGTCGGCTCCACCTCACCCGTCAGCATCTTGATCAGCGTCGA 131436 Query 333494 TTTTCCCGCACCATTTTCGCCTACCACACCAATCCTG-------GAGTTCAGCGATACCT 333546 || || ||||| || ||| | |||| | || | | ||| || || ||| Sbjct 131435 CTTACCGGCACCGTTGGGGCCAAGCACAGCGATACGGCTCGACAGAGCGCA-CGTCACCG 131377 Query 333547 GGGCATTCACGTTG-TCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCG 333605 | || |||| || | | | || ||||| || |||| | | | || Sbjct 131376 AGATGTT---GTTGATCGACG----GCTTCGGGGTACCAGGGTACTGGTA-CGAGCAGTT 131325 Query 333606 CGT-AGCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGG 333664 || || ||||||| |||| |||| | | ||||| || ||||| || Sbjct 131324 GGTCAGACGAATGATGGGCTTACCCTTGTTCTTGATGTCAGCAAGGAAACCAGGCTCCGG 131265 Query 333665 GAAC-----TTCCACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGA 333719 |||| | ||||| ||| || ||| || ||||||| | | ||||| Sbjct 131264 GAACGTGAACTTCACGTTGTC--CGACTC---CAGCTCGTAGTAGGCCTTGGCCTCGGGC 131210 Query 333720 CGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCG 333779 || || ||||| || || || |||||||| |||||||||| || | ||| Sbjct 131209 TTCTGCTCAACGAAGAGAGAAAGGTTGCCCTTGTAGATCTTCAGCTTACGG---GTCTCG 131153 Query 333780 TAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACG 333839 || ||||| || ||| || || ||| ||||| || |||||||| ||||| || | | Sbjct 131152 TAGTGGATGATGTTGGTACACACGTTGTCAAGGAAGCCAGAGTCGTGGGACACCATGATG 131093 Query 333840 CACGAAAC-GTCCTTAAGGTTGATCAGGTA-TTCAATC-AGCCACCTCACGTTAGACACA 333896 | | || ||| | | | | ||||||| ||| || ||||| ||||| ||| Sbjct 131092 GAGGTGACAGTCGGCACGCTCG-TCAGGTAGTTC--TCAAGCCAGGCGACGTTCTTGACA 131036 Query 333897 GAAAGATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGT 333956 | ||||| |||||||| ||||| || || | | || ||||| ||||| ||||| Sbjct 131035 TCCAAGTGGTTTGTCGGCTCATCAAGCAGCAGAATGTCAGCCTTCAGCAGCATAGCACGC 130976 Query 333957 GCAAGAGCGAGTTTCATTTTCCACCCTCCTGAAAGAGTGTTAATTGGGGCAGATTGGCGC 334016 | || |||||||||| ||||| || || ||||| | | | | || || | Sbjct 130975 GACAGCTCGAGTTTCATCTTCCAACCACCAGAAAGGGAGCCCACAGCCTGAGCCTGCATC 130916 Query 334017 TCAATATCAAAGCCAACCGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGTTT 334076 || ||||| || | |||| | | || | |||| | | Sbjct 130915 TCGGCGGTGAAGCCGACATCAGCCAGAGCGTCCTCAACCTCCTTGCGAG------GGGTG 130862 Query 334077 TCCTTTACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCATGTTAGAATCGGACCCG 334136 ||||| | | |||||| | |||||||||| | | | | || || || | Sbjct 130861 TCCTTCAGGTCGTCATCAATCAGGATGAAGTCAACCACCGTAAGCTCAGCCTCCGAAGCC 130802 Query 334137 TCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCTTCAAGC 334196 | || | ||| || ||| | |||| |||| | ||| |||||| || || ||| Sbjct 130801 TGCAGGTTGTGCTCGACGAACACAGTCTTCAGCTCGTCCTTGCTGGGGAAGCCCTCGAGC 130742 Query 334197 TGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCACACAGA 334256 || ||||| |||| ||||||||||| || || ||||| ||||| || || |||||| Sbjct 130741 TGGCCGTTGGCAATGGCGCGCATCAGCGTCGACTTACCACAACCGTTGGGACCGCACAGA 130682 Query 334257 CCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGAAGAATTTTTCCACCA 334316 ||||| |||| |||||||| || | || | |||||||| ||||| | ||||| Sbjct 130681 CCGTAACGGTGGCCACGCTTGAGGCGAAGACGGGCGTTGTTCAGCAGAATCATACCACCG 130622 Query 334317 TATGCCAGAGAAAATTCACA 334336 || || || || || || || Sbjct 130621 TAAGCGAGCGAGAACTCGCA 130602 >seq952 Length=187182 Score = 93.3 bits (102), Expect = 9e-14 Identities = 144/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 297434 TTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAAC 297493 || ||||||||||| || || || || |||||| || ||| ||| | || ||||||| Sbjct 135789 TTCGTGAAAATATAACGAGCGCTGGCTGCATCCTTGCCGCCCATCAAACGCGTACCGAAC 135848 Query 297494 TGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTC 297553 || || ||| ||| || |||||| |||||||||||| | ||||| || | ||| Sbjct 135849 TGACCGATTGGCGACAGGAGGTGGATGTTGTTGCTTCCGACAAAGTCCTGAGCCATGTTG 135908 Query 297554 ACGATGGTCCCTTGCAGA-GATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTA 297612 ||||| || |||| | ||| ||||| || || || ||| ||||||| || || Sbjct 135909 ACGATACAGCCCTGCAAACTCTGC-TCGCCGTGATGGTACGCGGAGTGCTCTGACACATA 135967 Query 297613 ACCGCTGAACTGTGCAACCTTCA 297635 ||| || ||||| ||||||| Sbjct 135968 ACCAGCCAATTGTGCCACCTTCA 135990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102857164869600