Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq784 98.7 1e-15 seq147 98.7 1e-15 seq929 87.8 2e-12 seq926 86.0 6e-12 >seq784 Length=83642 Score = 98.7 bits (108), Expect = 1e-15 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | |||||| || || ||||||||||| || | ||||| |||| Sbjct 18801 AGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCGTCC 18860 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 |||||||||||||| || | || || ||||||||||| || || || || || || || Sbjct 18861 TCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 18920 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTAT-CACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||||| || || | | | | |||| ||||| || | || | || Sbjct 18921 TGGATCTTCTGCTTGACGTTGTCGATCGAGTCCGACGGC-TCCACGTCCAGCGTGATCGT 18979 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| |||| || || ||||| || ||||| Sbjct 18980 CTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 19012 >seq147 Length=128699 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/190 (73%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 || || |||||||| || | || ||||| |||| || |||||||||||||| | || Sbjct 64798 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 64857 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375 || ||||||||||| || || || || || || || || ||||| ||||| ||| || Sbjct 64858 AGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 64917 Query 64376 A--CTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | |||| | |||| ||||| || | || | ||||||||| |||| || || || | Sbjct 64918 ATGCTGTCGGA-CGGC-TCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 64975 Query 64434 AAATTTGCAT 64443 | || ||||| Sbjct 64976 AGATCTGCAT 64985 >seq929 Length=274112 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||||||| ||||| | || | || | | ||||||||||| || | Sbjct 94305 ACCACCCCGCAATCTCAGCACCAAGTGCAGAGTGCTGCCGTACTGAATGTTGTAGTCCGA 94246 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || | || ||||||||||||||||||| ||| |||||| ||||||||| || ||||| Sbjct 94245 GAGCTTTCGACCGTCTTCAAGCTGCTTGCCTGCAAAAATGATCCGCTGCTGATCTGGAGG 94186 Query 64336 AATTCCTTCTTTTTCTTGTAT 64356 || || |||| ||| || || Sbjct 94185 GATACCCTCTTGTTCCTGAAT 94165 >seq926 Length=67561 Score = 86.0 bits (94), Expect = 6e-12 Identities = 328/511 (64%), Gaps = 13/511 (3%) Strand=Plus/Minus Query 155010 TCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCTTTGCGTTTTCCTCCT---TGA 155066 || |||||||| ||||| ||||| | ||| | | ||| || || || ||||| || Sbjct 30695 TCTGCGTGCCAAGGCTCCAAATAGATGGCGAAGGAGCCCTTACGCTTGCCTCCGCCCTGG 30636 Query 155067 TCCACGTGACGCACACAATTATTGTACACGCGCAACAATGGTTCCACGCCGCTGGCCGTG 155126 ||||||| ||| | | || |||| |||| || || | ||| ||| || | Sbjct 30635 TCCACGTACCGCGCGGTGTCGTTAAACACCCGCAGCATGGGGATGATGCCATTGGACGAG 30576 Query 155127 CCGTTGGTGCCACGTATCGCGCTGCCGCGAGCACGCGCTTTATGAACATTAACGCCCAAA 155186 ||||| ||||| || || |||| | || || || || | | | | ||| | | Sbjct 30575 CCGTTCGTGCCTCGGATGTAGCTGTTGGTGGCTCGGATGTTGTGCATACTGATGCCAATA 30516 Query 155187 CCTCCGCCGTATTTAGATATTTGCGCACAGTCCGCCAAAGTTTCGTACATTCCTTTGATG 155246 |||||| | ||||||| || ||||| | | || || ||||| || |||| || Sbjct 30515 CCTCCGGCCCATTTAGAGATACAGGCACATTGCTTTAACGTGTCGTAAATGCCTTCAATT 30456 Query 155247 CTGTCTTCTTTCAACGTCAACAAGAAACACGAAGATAATTGAGGTTGAGGGCAGCCGGCC 155306 ||| |||| || | ||| | ||| || || || | ||| || | || |||||| Sbjct 30455 GAGTCGTCTTGCATGGCCAATAGGAAGCAAGACGACAGTTGTGGGCGCGGCGTGCCGGCG 30396 Query 155307 GCAAATAATGTAGGACTAGCGTGTGT---AAACATTTTGTTGGCGGT-TAAGTT-GTAAG 155361 ||| | ||| || | || || || |||||||| ||| |||| | ||| | Sbjct 30395 TTAAAAAGTGTCGGGGTGGCATGCGTGAAAAACATTT-----GCGACATAAGCTCGTACG 30341 Query 155362 TTTCGATGGCGGCGTCAATGTCACGACCGTGTATACCGATCGCCACGCGCATCAGCATGT 155421 | || | |||||| |||||| | ||| || || | ||||||||||| | ||| | Sbjct 30340 TCTCCAGGGCGGCCGCAATGTTGCTCTTGTGGATGCCAAGTGCCACGCGCATAATCATTT 30281 Query 155422 GTTGAATGCGCTCCGCAACGCGGCCGTTGATGCGCTTTAAGTACCCATTTTCCAAAGTTT 155481 | || |||||| | || |||||| | ||| | |||||| || | ||||| Sbjct 30280 GCTGCGGACGCTCCACCACTTTGCCGTTTACGCGGAAGAGGTACCCGCGCTCGAGAGTTT 30221 Query 155482 TATACGCAAAATACTTGTATTCGTAGTCTCG 155512 || || |||| || | ||| || |||| || Sbjct 30220 TAAACCCAAAGTAGTCGTAATCAAAGTCCCG 30190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499634707175040