Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq787 136 2e-27 >seq787 Length=83116 Score = 136 bits (150), Expect = 2e-27 Identities = 384/587 (65%), Gaps = 12/587 (2%) Strand=Plus/Minus Query 65973 CGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCG 66032 || || |||||||||||||| || ||| || || ||| | |||||| || | Sbjct 18827 CGTGTGGTGGAGATCTACGGCCCCGAGAGCTCCGGCAAGACGACGTTGGCACTGAGCTGC 18768 Query 66033 GTGGCCAATGCCCAGAAGGCCGGTGGCAACGCC---GCCTACATCGACGCCGAACATTCT 66089 | || | || |||||| | | ||| | | |||| ||||||||| ||||| | Sbjct 18767 ATTGCTGAGGCTCAGAAGACGGAGGGCGGAGTCTGCGCCTTCATCGACGCAGAACACGCC 18708 Query 66090 CTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAG 66149 | ||| | | |||||| ||| || || || || | ||| || || |||| Sbjct 18707 ATTGACGCCCACTACGCCAAGGCTCTGGGTGTCGACATTGACGCGCTGTACGTCTCGCAG 18648 Query 66150 CCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTT 66209 || ||| | ||||| | || |||||||||| ||| ||| ||| ||| || | ||| Sbjct 18647 CCGGACTCGGGCGAAGAAGCTCTGGAGATCGCCGACACGCTCATCAGGTCGGGAGCGGTG 18588 Query 66210 TCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGAC 66269 | || | || ||||| |||||| || ||||||||||| |||||||| || || || Sbjct 18587 GACCTCGTGGTGCTGGACAGTGTGGCAGCGCTGGTGCCGCGTGCGGAGCTGGAGGGTGAA 18528 Query 66270 ATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTG 66329 || || ||| ||| | | ||||| || || || ||| |||||| |||| ||||| Sbjct 18527 ATGGGAGACCAGCAGATTGCACTGCAGGCGCGACTCATGAGTCAGGCGCTGCGAAAGCTC 18468 Query 66330 ACCGGCACGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAG 66389 || || || | ||| ||||| || | | |||| ||| | ||| ||||| Sbjct 18467 ACGGGGTCGCTGTCCAAGTCCAACTGCACCATTATCTTCCTGAACCAGATTCGCCAGAAG 18408 Query 66390 ATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTC 66449 | || | | | || ||| | |||| || | ||||| | |||||||| | | Sbjct 18407 GTGGGAATCAT---CTTCGGATCTCCTGAGGTTACGTCGGGTGGAACAGCTCTGCGTTAC 18351 Query 66450 TACGCCTCGGTGCGTATGGA---TGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGAG 66506 ||||| || || | |||| | |||| || |||| | ||||| ||||| || Sbjct 18350 TACGCGTCTGTAAGGCTGGACATTCGTCGCAAGACGGCCATC---AAGGAGGGCGACCAG 18294 Query 66507 GCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGC 66553 | |||||||||| ||| |||||||| | ||||||||| || || Sbjct 18293 GTTGTCGGCAACGAAACGGTGGTGAAGGTGGCCAAGAACAAACTTGC 18247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242465624545472