Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq926 405 5e-108 >seq926 Length=67561 Score = 405 bits (448), Expect = 5e-108 Identities = 1111/1692 (66%), Gaps = 45/1692 (3%) Strand=Plus/Plus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 ||||||||||| || || ||||| || || ||| ||||| |||| || || ||||| Sbjct 30376 GCCACCCCGACACTTTTTAACGCCGGCACGCCGCGCCCACAACTGTCGTCTTGCTTCCTA 30435 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || | | | | |||||| || || |||| ||||| | ||| | ||||| Sbjct 30436 TTGGCCATGCAAGACGACTCAATTGAAGGCATTTACGACACGTTAAAGCAATGTGCCTGT 30495 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| |||| || || || || || |||||| | ||| || | || |||| | Sbjct 30496 ATCTCTAAATGGGCCGGAGGTATTGGCATCAGTATGCACAACATCCGAGCCACCAACAGC 30555 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 |||||||| || || || ||| | ||||| ||| || |||| ||||| ||||| || ||| Sbjct 30556 TACATCCGAGGCACGAACGGCTCGTCCAATGGCATCATCCCCATGCTGCGGGTGTTTAAC 30615 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 || | ||||| |||||||||||||| || || | | | ||||| || ||||| ||||| Sbjct 30616 GACACCGCGCGGTACGTGGACCAGGGCGGAGGCAAGCGTAAGGGCTCCTTCGCCATCTAT 30675 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 | ||||| |||||||| || ||| | ||| | ||||| || ||||||||||||||| Sbjct 30676 TTGGAGCCTTGGCACGCAGATGTGTTCGAGTTCTTGGACCTCCGTAAGAACCACGGCAAC 30735 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || || | | || | ||||| |||||||| || |||||||| || || || ||||| Sbjct 30736 GAGTTGCACCGCGCTCGCGACCTGTTCTACGCCCTTTGGGTGCCTGATCTGTTCATGAAG 30795 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 | || || || | |||||||| | ||| || || || || ||||| | Sbjct 30796 AGGGTGGAAGCCAATGGCAAGTGGAGTCTCTATTGCCCTAACGAGGCCCCTGGACTCTAT 30855 Query 94372 GACGTTTGTGGATCG-CG-TTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGG 94429 || | ||| || || || || | | | |||| ||||| || |||| | Sbjct 30856 GA--GTGCTGGGGCGACGAATTCGAGGCCCTCTATGAAAAGTACGAGACGGAGGGACGCG 30913 Query 94430 CCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGA 94489 || | ||| || | || | |||||||| || |||||| ||| | |||| Sbjct 30914 CCCGCAAGACGATCAACGCCCAGCAGCTGTGGTTCGCCATATTGGACGCCCAGATTGAGA 30973 Query 94490 CGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACC 94549 |||| ||||| || |||| ||||||| | | |||| |||||| |||||| || ||| Sbjct 30974 CGGGAGTGCCCTTTATGTTGTACAAGGACGCGGCCAACCGCAAGTCGAACCAGAAGAACC 31033 Query 94550 TCGGGGTGATCAAGAGCTC---GAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGG 94606 |||| |||| |||| || | ||| ||| | | ||||| || || |||| Sbjct 31034 TCGGCACGATC---CGCTCCAGCAACTTATGCTGTGAGGTGATGGAGTACACGTCGCCGG 31090 Query 94607 ACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCT 94666 ||||| | |||||||| ||| ||| || | ||| | | |||||| || | Sbjct 31091 ACGAGGTGGCTGTGTGCAACTTGGCGTCTGTGGCGCTGCCTAAGTTCGTGGAGGAAG--G 31148 Query 94667 ACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGT-- 94724 | || ||| | | | || | | |||| | ||||| |||| Sbjct 31149 AGTTTTCAACT----------ACCAGAAGTTG--TATGAAGT---GACGAAGG-TGGTCA 31192 Query 94725 -CTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACT 94783 | ||| | |||| ||| |||||| |||| ||||||||| |||||| || | Sbjct 31193 CCCGCAACTTAAACAAGGTCATCGACGTCAACTACTACCCCGTGATCGAGGCGCGCAAGT 31252 Query 94784 CAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGA 94843 | ||| || || || |||||||| || ||||||||||| ||||||||||| | | Sbjct 31253 CCAACATGCGTCACCGCCCCATCGGTATTGGCGTCCAGGGCCTCGCGGACGCGTTTATCC 31312 Query 94844 TGATGCGTCTGC-CCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAA 94902 | ||| || | | | ||| | | || || | || |||||| ||||| Sbjct 31313 TCATG-AACTACGCGTTCGAGAGCGAGAAGGCCCGGGAGCTCAACAAGAACATCTTCGAG 31371 Query 94903 AGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCA 94962 | ||| || | || |||||| | || | | | |||| ||| ||| || Sbjct 31372 ACCATCTACTTCGCCGCCATGGAGACGTCGATGGAGATCGCCA---AGGAACTCGGCCCG 31428 Query 94963 CACGAATCGTTCCGCGGATCGCCC-TTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGG 95021 |||| |||||| || |||||| | | | ||||||| || ||||||||| | ||||| Sbjct 31429 TACGAGACGTTCCAGGGCTCGCCCGCTAGCA-AGGGCATCTTCCAGTTCGACATGTGGGG 31487 Query 95022 TGTGA---AGCCCTCGGGTCTGTACGACTGGG--AAGCTCTACGCGCTGATGTTATCAAA 95076 || | | | |||||| ||| |||||| | |||| | | | || || ||||| Sbjct 31488 CGTCACCCCGTCGTCGGGTATGTGGAACTGGGCTACGCTCAAGGAG--GACGTGATCAAG 31545 Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 ||||| | ||| ||||||| |||||||||||||| ||||| |||||||| |||||| Sbjct 31546 CACGGACTCCGCAACTCGCTGCTGGTGGCCCCCATGCCGACGGCTTCCACGGCCCAGATC 31605 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196 ||||| ||||||||||| |||| || | ||| |||||| |||||||| | || ||||| Sbjct 31606 CTTGGAAACAACGAGTCTATCGAGCCGTACACGTCCAACATGTACAACCGCCGAGTGCTG 31665 Query 95197 GCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTG 95256 || || || ||| | || |||||||| |||| | ||| |||| || || | Sbjct 31666 GCTGGAGAGTTCACGATCGTCAACAAGTACCTGATGAAGGAGCTGATCGAGCTCGGCATC 31725 Query 95257 TGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCG 95316 ||| | || ||||| | | || || ||||||||| |||||| || | Sbjct 31726 TGGACGCCGGACGTGCGCAACCAGATCTTGAACGACAGCGGCTCCGTGCAGAACGTCAAG 31785 Query 95317 CAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTG 95376 || ||||| || |||||| | |||||||| |||||||||||| |||| | | Sbjct 31786 GCGATCCCGGACCACGTCAAGGAGAAGTACAAGACGGTGTGGGAGATCAAGCAGAAGGCG 31845 Query 95377 ATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAGNNNNNNNNNNNNNNNN 95436 | || |||| |||||| |||||| | | ||| |||||||| Sbjct 31846 GTGCTGGACCTGTCGGCCGACCGCGGTGCGTACATTTGCCAGAGTCAGTCGCTCAACATC 31905 Query 95437 NNNATGGCCGAGCCCAGTCGCGGAAAAATAACGTCCATGTTGTTCTACGGGTGGAGAAAG 95496 || ||||| || | | | || | ||||| ||| ||||||| |||| ||| Sbjct 31906 CACATCGCCGACCCGACCATCAGCAAGCTCACGTCGATGCACTTCTACGCCTGGAAGAAG 31965 Query 95497 GGTCTCAAGACCGGTATGTATTATTTGCGAACCAGGCCAAAGGCGGACTCCATACAGTTC 95556 || ||||||||||| ||||| || |||| | || || || ||| |||| ||||| Sbjct 31966 GGGCTCAAGACCGGCATGTACTACATGCGCGGACGCCCGAAAGCCGACGCCATCAAGTTC 32025 Query 95557 GCCCTAGAAAAG 95568 || | || ||| Sbjct 32026 ACCGTGGACAAG 32037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494713206591360