Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq1367 104 2e-17 seq1562 95.1 9e-15 >seq1367 Length=26892 Score = 104 bits (114), Expect = 2e-17 Identities = 170/245 (69%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 108355 ACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCCACCGCCCCGTTCAGG 108414 |||||||||| || ||| | ||| | ||| | ||||||||||| ||| | | Sbjct 15450 ACGGCCGGCGCGCACCGGCTCTGGTCACACCGCGGCTACAAGGCCAAGCTGCCGCTGCGC 15509 Query 108415 GTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATCCCGCAGTGGGTGCTC 108474 ||| | || ||| ||| |||| |||| || ||||||| ||||| || | Sbjct 15510 GTGGTGCTCATGCTGTGCAACTCGATGGCCTTCGAGGGCACCATCTTCGAGTGGTCGCGC 15569 Query 108475 GATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAACGCCAACAGG 108534 || ||| | || ||||||||| ||| ||||||||||||||||| |||||| | | | Sbjct 15570 GACCACCGCGTGCACCACAAGGCCTCGGACACGACGGCCGACCCGCACAACTCGGGCCGC 15629 Query 108535 GGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGACGTGATCTCG 108594 || ||| ||||||||| |||| ||| ||||| || |||| || ||||| | || Sbjct 15630 GGCCTCTTCTTCTCGCACATGGGCTGGGTCATGGTGCGCAAGCACAAGAACGTGCGCGCG 15689 Query 108595 GCCGG 108599 ||||| Sbjct 15690 GCCGG 15694 >seq1562 Length=137068 Score = 95.1 bits (104), Expect = 9e-15 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 108453 CACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGC 108512 ||||||| || ||| | ||| ||| | || |||||||||||||| ||||||| || Sbjct 60899 CACCATCTTCCACTGGAGCCGCGACCACCGCGTGCACCACAAGTACTCGGACACGAGCGC 60958 Query 108513 CGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGAC 108572 |||||| |||||| | | | || |||| ||| ||||| |||| ||||| || | | Sbjct 60959 CGACCCGCACAACTCGGGCCGCGGCTTCTTCTTCGCGCACATGGGCTGGCTGCTGGTCAA 61018 Query 108573 CAAGGACCCCGACGTGATCTCGGCCGG 108599 ||||||||| | |||||| |||||| Sbjct 61019 GAAGGACCCCAAGGTGATCAAGGCCGG 61045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381765280984704