Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq784 154 1e-32 seq926 134 1e-26 seq147 102 8e-17 >seq784 Length=83642 Score = 154 bits (170), Expect = 1e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | |||| ||||| || | ||| ||||| || ||||| ||||| |||| Sbjct 18785 TCCACCACGAAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCT 18844 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||||||| || || ||||| || |||||| |||||| |||||||| || || || Sbjct 18845 CAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 18904 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||||||||||||| ||| |||||||||| |||| |||| | ||||| ||| | Sbjct 18905 GATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTG-TCGATCGAGTCCGACGGCTCCA 18963 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || | || | ||| ||||| ||||| || || || || |||||||| Sbjct 18964 CGTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 19012 >seq926 Length=67561 Score = 134 bits (148), Expect = 1e-26 Identities = 295/441 (67%), Gaps = 6/441 (1%) Strand=Plus/Minus Query 145758 GCGCAGATAGTACATGCCGGTCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGA 145817 ||||| ||||||||||||||||||||| |||| ||| | ||| ||||| || ||| Sbjct 31995 GCGCATGTAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCAT---CGA 31939 Query 145818 CATGACCGAGTACGTGG---GTTCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAAT 145874 | ||| | | ||| | ||||||| | || || || || ||||| ||| Sbjct 31938 CGTGAGCTTGCTGATGGTCGGGTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAAT 31879 Query 145875 GAAAGGAGCCCGGTCGGCGGCCATGTCTATCATGCACTTTGATTTAATTTCCCATGCGGT 145934 | | | | | |||||||| | || ||| | || ||| || || ||||| | || Sbjct 31878 GTACGCACCGCGGTCGGCCGACAGGTCCAGCACCGCCTTCTGCTTGATCTCCCACACCGT 31819 Query 145935 TTTAAAGAGATCCTTGACGTGCTGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTC 145994 || | ||||||||||| | || || | | | ||||||||| || || | || Sbjct 31818 CTTGTACTTCTCCTTGACGTGGTCCGGGATCGCCTTGACGTTCTGCACGGAGCCGCTGTC 31759 Query 145995 GGCCAATATTTTGTTGCGCAATTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCTTGAT 146054 | ||| || | |||||||| || || || | ||| | || | || |||| || Sbjct 31758 GTTCAAGATCTGGTTGCGCACGTCCGGCGTCCAGATGCCGAGCTCGATCAGCTCCTTCAT 31699 Query 146055 GAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCT 146114 || |||| |||||| | | ||||| || || || || || | |||| |||| Sbjct 31698 CAGGTACTTGTTGACGATCGTGAACTCTCCAGCCAGCACTCGGCGGTTGTACATGTTGGA 31639 Query 146115 GGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCAT 146174 ||| ||||||||| ||||||||||| || || ||||| ||||| | ||| || ||||| Sbjct 31638 CGTGTACGGCTCGATAGACTCGTTGTTTCCAAGGATCTGGGCCGTGGAAGCCGTCGGCAT 31579 Query 146175 GTACGCCACCAGCAAAGAGTT 146195 | |||||||||| ||||| Sbjct 31578 GGGGGCCACCAGCAGCGAGTT 31558 >seq147 Length=128699 Score = 102 bits (112), Expect = 8e-17 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| || | |||||| || || ||||| || || ||| ||||| Sbjct 64798 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 64857 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | |||||||| || || || ||||||||||||||| |||||||||||||| | || Sbjct 64858 AGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 64917 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | | |||| | ||| || || | || | || ||||| ||||| || || ||||| Sbjct 64918 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 64977 Query 127106 ATCTGCATG 127114 ||||||||| Sbjct 64978 ATCTGCATG 64986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475491194883840