Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq926 210 3e-49 seq1029 114 2e-20 >seq926 Length=67561 Score = 210 bits (232), Expect = 3e-49 Identities = 887/1384 (64%), Gaps = 34/1384 (2%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 || ||||||| |||||| ||||| | |||| ||||| || | ||| ||||| ||||| Sbjct 31649 TACATGTTGGACGTGTACGGCTCGATAGACTCGTTGTTTCCAAGGATCTGGGCCGTGGAA 31590 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || || |||||||| |||| || || ||||||||| || | | | | ||| Sbjct 31589 GCCGTCGGCATGGGGGCCACCAGCAGCGAGTTGCGGAGTCCGTGCTTGATCACGTCCTCC 31530 Query 116023 TTGAGGGCGTCCCAGT----CGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTG 116078 ||||| | |||||| | || || | | | | ||||||| || ||||| Sbjct 31529 TTGAGCGTAGCCCAGTTCCACATACCCGACGACGGGGTGACGC-CCCACATGTCGAACTG 31471 Query 116079 GAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGC 116138 || ||| || | | || ||||| |||| || ||||| || ||||| ||| || Sbjct 31470 GAAGATGCCCTTGCTAGCGGGCGAGCCCTGGAACGTCTCGTACGGGCCGAGTTCCTTGGC 31411 Query 116139 CAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCAT 116198 | || || ||| | ||| ||| || || ||||| || ||| || | Sbjct 31410 GATCTCCATCGACGTCTCCATGGCGGCGAAGTAGATGGTCTCGAAGATGTTCTTGTTGAG 31351 Query 116199 TGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAA-ATAAATACATCCGCGAGAC 116257 || ||||| ||| || |||||| | || | ||||| | |||||||| | Sbjct 31350 CTCCCGGGCCTTCTCGCTCTCGAACGCGT-AGTTCATGAGGATAAACGCGTCCGCGAGGC 31292 Query 116258 CTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CA 116314 | ||||| || | || || ||||| || | ||| || ||||| || || ||| || Sbjct 31291 CCTGGACGCCAATACCGATGGGGCGGTGACGCATGTTGGACTTGCGCGC---CTCGATCA 31235 Query 116315 CGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTT 116374 |||| || | || ||||| ||| | |||| || |||||| ||||| || | || Sbjct 31234 CGGGGTAGTAGTTGACGTCGATGACCTTGTTTAAGTTGCGGGTGACCACCTTCGTCACTT 31175 Query 116375 CATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGA 116434 ||| | ||| | ||| | ||| | || |||| | || ||||||| || || | Sbjct 31174 CATACAACTTCTGGTAGTTGAAA-----ACTC-CTTCCTCCACGAACTTAGGCAGCGCCA 31121 Query 116435 TTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTAC 116494 ||||||| || ||||||| ||| ||| |||||||| || | || | Sbjct 31120 CAGACGCCAAGTTGCACACAGCCACCTCGTCCGGCGACGTGTACTCCATCACCTCACAGC 31061 Query 116495 ACAAATT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGC 116552 | || || || | || ||||| | |||||| || || ||||| ||| ||| Sbjct 31060 ATAAGTTGCTGGAGCGG--ATCGTGCCGAGGTTCTTCTGGTTCGACTTGCGGTTGGCCGC 31003 Query 116553 ATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA 116612 |||||||| | |||| | ||| |||||||| | |||| | | || || ||| Sbjct 31002 GTCCTTGTACAACATAAAGGGCACTCCCGTCTCAATCTGGGCGTCCAATATGGCGAACCA 30943 Query 116613 TACATCGGC--GGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAG 116670 || | || ||| | || | ||| || |||||| |||||||||| ||| Sbjct 30942 --CAGCTGCTGGGCGTTGATCGTCTTGCGGGCGCGTCCCTCCGTCTCGTACTTTTCATAG 30885 Query 116671 AGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAA 116729 |||||||| || || || ||| |||| ||| |||| || || |||| | || || | Sbjct 30884 AGGGCCTCGAATTCGTCGCCC-CAGCACTCATAGAGTCCAGGGGCCTCGTTAGGGCAATA 30826 Query 116730 GAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 116789 |||| ||| | ||| | || |||| ||||||||| || || || | ||| || || Sbjct 30825 GAGACTCCACTTGCCATTGGCTTCCACCCTCTTCATGAACAGATCAGGCACCCAAAGGGC 30766 Query 116790 CGAGAAGAGATCCCGACAGC-GAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAA 116848 |||| || || ||| || | || | || | || || || ||| | ||||| | Sbjct 30765 GTAGAACAGGTCGCGAGCGCGGTGCAAC-TCGTTGCCGTGGTTCTTACGGAGGTCCAAGA 30707 Query 116849 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---AC 116905 | || | | ||| |||||||| || |||| || | |||| || ||||| || | Sbjct 30706 ACTCGAACACATCTGCGTGCCAAGGCTCCAAATAGATGGCGAAGGAGCCCTTACGCTTGC 30647 Query 116906 GACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATAC 116965 || |||||| || |||| ||| || ||||||| || || ||||| || ||||| | Sbjct 30646 CTCCGCCCTGGTCCACGTACCGCGCGGTGTCGTTAAACACCCGCAGCATGGGGATGATGC 30587 Query 116966 CATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGT 117025 ||| || ||| || || || || || ||| |||||| || | ||| || Sbjct 30586 CATTGGACGAGCCGTTCGTGCCTCGGATGTAGCTGTTGGTGGCTCGGATGTTGTGCATAC 30527 Query 117026 GCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGA 117085 || |||||||| || ||||| || ||||| || || | | | | || |||| | Sbjct 30526 TGATGCCAATACCTCCGGCCCATTTAGAGATACAGGCACATTGCTTTAACGTGTCGTAAA 30467 Query 117086 TCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTG 117145 | || || || ||||| | | | || | |||||||| ||||| |||||| | | Sbjct 30466 TGCCTTCAATTGAGTCGTCTTGCATGGCCAATAGGAAGCAAGACGACAGTTGTGGGCGCG 30407 Query 117146 GTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTAT 117205 | || || ||||| || || || || || || || |||| | ||| ||||| | Sbjct 30406 GCGTGCCGGCGTTAAAAAGTGTCGGGGTGGCATGCGTGAAAAACATTTGCGACATAAGCT 30347 Query 117206 CGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAA 117265 |||| ||||||| | | | | ||||| | ||| || || | || || ||||||| Sbjct 30346 CGTACGTCTCCAGGGCGGCCGCAATGTTGCTCTTGTGGATGCCAAGTGCCACGCGCATAA 30287 Query 117266 ACAT 117269 ||| Sbjct 30286 TCAT 30283 >seq1029 Length=318196 Score = 114 bits (126), Expect = 2e-20 Identities = 187/267 (70%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 |||||||||||| ||| || || |||||||||| ||| || ||| |||| || |||||| Sbjct 189387 CCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCGTGAGGCCGCGCTTC 189328 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | |||||| |||| || || ||||| ||||||||||| |||||||| |||||| Sbjct 189327 TTGAGCCAGAAGATCGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCCACGGTTGCGAAC 189268 Query 127658 GCAAATAGACGCTCGGCAAAGGAGCGGGACT-TTGTATCAAACCACTTCATCGCCCACTG 127716 | | | ||||| | | || || ||| | || ||||||| | |||||| || Sbjct 189267 GTCAGCACGCGCTCCGGGTACGA-CGACACTCGCGGGTCGCACCACTTGAGCGCCCAGTG 189209 Query 127717 TGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCTGA 127776 || || |||| | ||| || | || | ||| || | || | | ||| || | Sbjct 189208 CGCTTTCTTCTTCACACACGGAATCGTATCGATGGCACGCAGCAGGTGGTCCTTCTCCGT 189149 Query 127777 TGGATCTTTGATGTACTTATCTATGAG 127803 | ||| ||||||||| | || ||||| Sbjct 189148 CGCATCCTTGATGTACGTGTCAATGAG 189122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613494807154560