Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1029 307 1e-78 seq784 134 1e-26 seq147 122 9e-23 seq868 98.7 1e-15 >seq1029 Length=318196 Score = 307 bits (340), Expect = 1e-78 Identities = 556/800 (70%), Gaps = 20/800 (3%) Strand=Plus/Minus Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGC 132780 ||||| | |||||||||||||||||||||||| ||||| | | || | || | | Sbjct 189582 AGCAGACGGTCGGCCACGAACTCGATGTATTGGCACATGAGCGCCGAGTTCATGCCGATC 189523 Query 132781 AGACGC-ACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGACCGCGTCGGTGA 132838 ||| | || || |||| || | ||| ||| ||||||| | ||| ||||| | Sbjct 189522 -GACTCCACAGGGAGCGAGTCACGCACGAACTCGT-GCTCGATCGTCACCCCGTCGCGCA 189465 Query 132839 CGATTTCCCTAACGCG-CGCCGCGCTCGGCCGTTGCACCAAATGCTTGAA---CATCAAG 132894 |||| || ||||| | || || | ||| ||||| ||||| | ||| | | Sbjct 189464 CGATCTCGTGCACGCGGCTCCCCGGCAGCTTGTT-CACCA---GCTTGGAGTACATGAGG 189409 Query 132895 CAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAG 132954 || || ||||| |||| ||||||||| | | || || ||||| ||| ||| | Sbjct 189408 CACGCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGG 189349 Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAG 133014 || ||| |||||||||| || |||||||| || || | | ||| |||||| |||||| Sbjct 189348 CCAGGCGTGAGGCCGCGCTTCTTGAGCCAGAAGATCGAGCAGAACGAGCCCGAGAAGAAG 189289 Query 133015 ACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGG-C 133073 | |||||| |||| ||||| | || || |||||| | ||| | || || || | Sbjct 189288 ATGCCCTCCACGGTTGCGAACGTCAGCACGCGCTCCGGGTACGACGACACTC-GCGGGTC 189230 Query 133074 GATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTT 133133 | ||| |||||||| | || || | || || ||||| ||||| |||||||| Sbjct 189229 GCACCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGAATCGTATCGATGGCACG 189170 Query 133134 CAACAAACGGAGTTTCTCTTCCGAGGAACGC---ACGTAGGTGTCGATGAGGGTCGAATA 133190 || || || | | || |||| | | | | ||| ||||| ||||| |||||| Sbjct 189169 CAGCA---GGTGGTCCTTCTCCGTCGCATCCTTGATGTACGTGTCAATGAGCAGCGAATA 189113 Query 133191 CATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGAC 133250 || || ||||| | |||||| |||||||| || || ||||| ||||| || ||||| Sbjct 189112 CACCTCTGAGTGGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCAGCGGGCCTCCGG 189053 Query 133251 CACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGC 133310 ||||||||||| | ||| | | |||| || ||||| ||||||||||||||||| Sbjct 189052 TACCTGCACTTCATTGCTGAAGTTCATGGCCAGGTTCTCGTTCACGATGCCGTCGCTGGC 188993 Query 133311 GGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCA 133370 ||||| ||||||||||||||||||||||| ||||||||||| ||| | | |||| Sbjct 188992 AGCGAAGAAGGCCAGCACGTGCTTGATGAAGAACCGCTCGTTGTCCGTCAGGTTCGCCCA 188933 Query 133371 GTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTT 133430 ||| | ||| | |||||||| ||||||| | ||||| ||||| ||||| ||||| Sbjct 188932 GTCCTTCAGGTCGTGCACCAGGTCCAGCTCCTCGGCCGTCCAGAACGAGGCCTCCGCTTT 188873 Query 133431 TTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTT 133490 |||||||| ||||| ||| | || || || || | ||| |||||| ||||| Sbjct 188872 CTTGTACATCTGCCACACGTCGTGCTCCTGGATCGGGAACAGCACGAACCGGTTCGGGTT 188813 Query 133491 TTCGCGCAACAGCGGCTCCG 133510 ||| || | |||||||| Sbjct 188812 CTCGACCAGGAACGGCTCCG 188793 >seq784 Length=83642 Score = 134 bits (148), Expect = 1e-26 Identities = 163/217 (75%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| |||||||| || ||||| | ||||| ||| | | Sbjct 19012 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 18953 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 ||| | | |||| | || | || |||| ||||| ||||| || |||||| |||| Sbjct 18952 GACTCGATCGACAACG-TCAAGCAGAAGATCCAGGACAAGGAGGGCAT-CCCGCCTGACC 18895 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| ||||| ||||| || |||| ||||| || | |||||||| Sbjct 18894 AGCAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACA 18835 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||| || ||||| |||||||||| |||||||||| Sbjct 18834 ACATTCAGAAGGAGTCGACGCTGCACCTGGTGCTGCG 18798 >seq147 Length=128699 Score = 122 bits (134), Expect = 9e-23 Identities = 143/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| |||||||| | ||||| ||| | || Sbjct 64985 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 64926 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||||| | | | | || | ||||||| ||||| ||||| || |||||| ||||| Sbjct 64925 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGCAT-CCCGCCTGACCA 64867 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| ||||| || |||| ||||| ||| |||||||| Sbjct 64866 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAA 64807 Query 38423 CATCCAAAAGG 38433 |||||| |||| Sbjct 64806 CATCCAGAAGG 64796 >seq868 Length=80962 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/126 (79%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 ||||| ||| | ||||| ||||| || || | ||| ||||| |||||||| |||| ||| Sbjct 33951 GGAATCCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 33892 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAG 38464 ||||| |||||||||||||| ||||| ||| |||||||| ||||||| ||| || | Sbjct 33891 ACCCTTTCGGACTACAACATCCAGAAGGAGAGC-ACGCTGCACCTGGTGCTTCGTCTGCG 33833 Query 38465 AGGCGG 38470 || || Sbjct 33832 TGGTGG 33827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500162696509440