Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq926 174 2e-38 seq1029 116 5e-21 >seq926 Length=67561 Score = 174 bits (192), Expect = 2e-38 Identities = 367/538 (68%), Gaps = 11/538 (2%) Strand=Plus/Plus Query 111705 TTCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGT 111764 |||| || || || || || || || ||||| || || || | || ||| |||| | Sbjct 30367 TTCACGCATGCCACCCCGACACTTTTTAACGCCGGCACGCCGCGCCCACAACTGTCGTCT 30426 Query 111765 TGTTTCCTTATTG--CAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTG 111822 || ||||| |||| || |||| | || ||||| | |||||||||| ||| | | Sbjct 30427 TGCTTCCT-ATTGGCCATGCAAG-ACGACTCAATTGAAGGCATTTACGACACGTTAAAGC 30484 Query 111823 AATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAG 111882 |||||||| ||||| || ||||| || ||||| || || || || | || ||| Sbjct 30485 AATGTGCCTGTATCTCTAAATGGGCCGGAGGTATTGGCATCAGTATGCACAACATCCGAG 30544 Query 111883 CCAACAAGTCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTC 111942 ||| ||| || |||| || || || || |||| || || || ||||| | Sbjct 30545 CCACCAACAGCTACATCCGAGGCACGAACGGCTCGTCCAATGGCATCATCCCCATGCTGC 30604 Query 111943 GCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTA 111999 | || ||||||| ||| ||||| || || |||| | || | || ||||| || Sbjct 30605 GGGTGTTTAACGACACCGCGCGGTACGTGGACCAGGGCGGAGGCAAGCGTAAGGGCTCCT 30664 Query 112000 TCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCA 112059 |||| ||||| | ||||| |||||||| ||| | | |||||| | || | ||| | Sbjct 30665 TCGCCATCTATTTGGAGCCTTGGCACGCAGATGTGTTCGAGTTCTTGGACCTCCGTAAGA 30724 Query 112060 ACCAAGGTGATGAGGAGGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGAT 112118 |||| || | ||| | | | | || ||||| || |||| ||| || ||| | || ||| Sbjct 30725 ACCACGGCAACGAGTTG-CACCGCGCTCGCGACCTGTTCTACGCCCTTTGGGTGCCTGAT 30783 Query 112119 CTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCA 112178 || ||||||||||| || || | | |||||| ||| ||||| ||| || || |||| Sbjct 30784 CTGTTCATGAAGAGGGTGGAAGCCAATGGCAAGTGGAGTCTCTATTGCCCTAACGAGGCC 30843 Query 112179 CCCGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAG 112235 || || |||| || ||| | ||| || || || || |||||||| |||||||||| Sbjct 30844 CCTGGACTCTATGAGTGCTG-GGGCGACGAATTCGAGGCCCTCTATGAAAAGTACGAG 30900 >seq1029 Length=318196 Score = 116 bits (128), Expect = 5e-21 Identities = 189/270 (70%), Gaps = 8/270 (3%) Strand=Plus/Plus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 102107 ||||| |||| ||| || ||||||| | |||||| | || || | |||||| | Sbjct 189122 CTCATTGACACGTACATCAAGGATGCGACGGAGAAGGACCACCTGCTGCGTGCCATCGAT 189181 Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATAC---AAAG 102164 || |||| ||| | | ||||||||| | ||||| | ||||||| || | | | Sbjct 189182 ACGATTCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGAGTG 189241 Query 102165 TCG-CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 102223 ||| ||| || | ||||| | | | || || || ||||| ||||||||||| Sbjct 189242 TCGTCGTACC----CGGAGCGCGTGCTGACGTTCGCAACCGTGGAGGGCATCTTCTTCTC 189297 Query 102224 TGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 102283 || || |||||| | || | |||||||||||||| || |||| ||| || || |||| Sbjct 189298 GGGCTCGTTCTGCTCGATCTTCTGGCTCAAGAAGCGCGGCCTCACGCCTGGCCTGAGCTT 189357 Query 102284 CTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 ||| |||||||| ||| ||||||||||| Sbjct 189358 CTCGAACGAGCTGATCAGCCGTGACGAGGG 189387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620729861003520