Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq926 141 1e-28 seq807 136 5e-27 seq464 86.0 7e-12 seq952 82.4 9e-11 >seq926 Length=67561 Score = 141 bits (156), Expect = 1e-28 Identities = 647/1006 (64%), Gaps = 39/1006 (4%) Strand=Plus/Minus Query 110092 AGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTA 110151 || |||||| | ||||| || ||||| || || | ||| |||||||| || |||||| Sbjct 31313 AGGATAAACGCGTCCGCGAGGCCCTGGACGCCAATACCGATGGGGCGGTGACGCATGTTG 31254 Query 110152 GAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTC 110211 || || || |||||||| ||||| |||||||||| || | || Sbjct 31253 GACTTGCGCGCCTCGATCACGGGGTAGTAGTTGACGTCGATGACCTTGTTTAAGTTGCGG 31194 Query 110212 GTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTG 110271 || || |||||| | ||||| | || | ||| | ||| |||||| | Sbjct 31193 GTGACCACCTTCGTCACTTCATACAACTTCTGGTAGTTGAAAA-------CTCCTTCCTC 31141 Query 110272 -ACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCG-- 110328 || | || || || || | |||||| | |||||||||| |||||| | || Sbjct 31140 CACGAACTTAGGCAGCGCCACAGACGCCAAGTTGCACACAGCCACCTCGTCC--GGCGAC 31083 Query 110329 GTGTATTCCAAAATTTCCGTACACAAGTTG---GAACTCTTAATGACACCCAAGTTCTTC 110385 ||||| |||| | || || |||||| || | | || || | ||||||| Sbjct 31082 GTGTACTCCATCACCTCACAGCATAAGTTGCTGGAGCGGATCGTG---CCGAGGTTCTTC 31026 Query 110386 TGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTC 110445 || ||||| ||| |||| || ||||| || | ||| | || || || || || Sbjct 31025 TGGTTCGACTTGCGGTTGGCCGCGTCCTTGTACAACATAAAGGGCACTCCCGTCTCAATC 30966 Query 110446 TGTGACTTGAGAATGGCCTTCCATACATCGGC--GGCGGGGACAGT--TGCGTTAGCGAG 110501 || | | | ||||| ||| || | || |||| || || |||| ||| | Sbjct 30965 TGGGCGTCCAATATGGCGAACCA--CAGCTGCTGGGCGTTGATCGTCTTGCGG--GCGCG 30910 Query 110502 ACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTA-CACATCAGAAA 110560 || ||| ||||||||| || | | |||| ||||| | || | ||| ||| | | Sbjct 30909 TCCCTCCGTCTCGTACTTTTCATAGAGGGCCTCGAATTCGTCGCCCCAGCAC-TCATAGA 30851 Query 110561 GACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCA 110620 | || |||| || || || |||| ||| || ||| | || |||||||||| Sbjct 30850 GTCCAGGGGCCTCGTTAGGGCAATAGAGACTCCACTTGCCATTGGCTTCCACCCTCTTCA 30791 Query 110621 TGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACG-GCAACGAGCCTCTTCATCA 110679 ||||||| ||||| | ||| | || |||| ||||| || || | || | || | Sbjct 30790 TGAACAGATCAGGCACCCAAAGGGCGTAGAACAGGTCGCGAGCGCGGTGCAAC-TCGTTG 30732 Query 110680 CCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAG 110739 || ||||| || || ||||| || || | | ||| | |||||| || || | |||| Sbjct 30731 CCGTGGTTCTTACGGAGGTCCAAGAACTCGAACACATCTGCGTGCCAAGGCTCCAAATAG 30672 Query 110740 ACAGCGATGGATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTG 110796 | |||| ||| |||||||| | || |||||| || || || || ||| | || Sbjct 30671 ATGGCGAAGGAGCCCTTACGCTTGCCTCCGCCCTGGTCCACGTACCGCGCGGTGTCGTTA 30612 Query 110797 AAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGAC 110856 || |||| ||||| || || || |||| ||| || || || || | || | Sbjct 30611 AACACCCGCAGCATGGGGATGATGCCATTGGACGAGCCGTTCGTGCCTCGGATGTAGCTG 30552 Query 110857 TTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGT 110916 || |||| || |||| ||| ||| || |||||||| || ||||| ||| || Sbjct 30551 TTGGTGGCTCGGATGTTGTGCATACTGATGCCAATACCTCCGGCCCATTTAGAGATACAG 30492 Query 110917 GCACACT-CTGTGA-GTGTACCATAAATACCATCAATCGAATCTGCCTTG-TTGGCAATT 110973 ||||| | || | | |||| | ||||| || ||||| || || | |||| |||| | | Sbjct 30491 GCACATTGCTTTAACGTGT--CGTAAATGCCTTCAATTGAGTC-GTCTTGCATGGCCAAT 30435 Query 110974 AGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCA 111033 || |||||||| |||| || || || ||||| || || || || ||||| || || ||| Sbjct 30434 AGGAAGCAAGACGACAGTTGTGGGCGCGGCGTGCCGGCGTTAAAAAGTGTCGGGGTGGCA 30375 Query 111034 TGAATGAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGG 111079 || |||| | ||| ||||| | ||| || || || |||| Sbjct 30374 TGCGTGAAAAACATTTGCGACATAAGCTCGTACGTCTCCAGGGCGG 30329 >seq807 Length=218117 Score = 136 bits (150), Expect = 5e-27 Identities = 340/510 (67%), Gaps = 15/510 (3%) Strand=Plus/Plus Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556 |||| || ||||| ||||| || || || | || | |||||||||||| | ||||| Sbjct 132094 ATCTGCCGGTCGAATCGACCGGGACGCAGGATGGCCTTGTCAAGAATATCGGCGCGGTTC 132153 Query 11557 GTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAGA 11613 ||| | |||| || || | ||| |||| | || |||||| ||||| || || Sbjct 132154 GTACCAGCAAGCACCACCACGCC---CTCACTCGAGTTGAAACCATCCATCTCGACCAGC 132210 Query 11614 AGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTC 11673 | |||||| | ||| | ||||||||| |||||| | | | | |||| ||| | Sbjct 132211 AACTGGTTCAGCGTGTTTTCACGCTCGTCGTTGCCGCCCG-AGAAGTTGCCCTT-GCTAC 132268 Query 11674 TTAC-----CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTG 11728 | | | ||||||||||| ||||| ||||| ||||| ||||| || || || | Sbjct 132269 GTGCGCGGGCCACAGCGTCAATTTCATCAATGAACACGATGCACGGGGCATTTGCGCGCG 132328 Query 11729 CCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGT 11788 ||| | ||| || ||||| ||||| | || ||||| || |||||||| | ||| | Sbjct 132329 CCTCCTTGAACAGGTCACGCACACGGGATGGCCCCACACCGACAAACATCTCGATGAAAT 132388 Query 11789 TTGCGGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGG 11847 | | || | ||||| ||| || ||| | | ||||||||| | || || || Sbjct 132389 CCGAACCCGAGATGCTGAA-GAAAGGTACACTGGCCTCACCAGCCGTAGCCTTCGCCAGC 132447 Query 11848 AGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCA 11907 || |||||||||||||| || | || | || || || || ||||||||| ||||| Sbjct 132448 AGCGTCTTACCCGTACCGGGAGGTCCGACTAGCAGCGCACCCTTGGGGATCTTCGCACCG 132507 Query 11908 CTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTG 11967 || | |||||| | || || |||||||| | |||| | |||| |||| Sbjct 132508 AGCTCAGTGAAGCGCTTCTGGTTGCGAAGAAAGTCCACGAACTCCATGATCTCCTTCTTG 132567 Query 11968 GCGGAGTCGATACCCTCAACATCGGTGAAA 11997 || ||| | ||| | ||||| ||||| Sbjct 132568 GCCTCGTCCACACCGGCCACATCCTTGAAA 132597 >seq464 Length=3002 Score = 86.0 bits (94), Expect = 7e-12 Identities = 294/446 (66%), Gaps = 13/446 (3%) Strand=Plus/Plus Query 11551 CGGTTTGTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCT 11607 ||||| ||||||||||| || | || ||| | |||| ||||| || ||||| ||| Sbjct 1388 CGGTTCGTAGCGGCAATAACGATAACTCCATTGGCATTTCCTTCGAAGCCATCCATCTCT 1447 Query 11608 GTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAA 11667 || || | |||||| | ||| || || || |||||||| ||| | ||| || | ||| Sbjct 1448 GTCAGCAACTGGTTTAGCGTTTGCTCCCGTTCATCGTTTGAGTTGA-ACCCCCCG-CGAG 1505 Query 11668 CGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGT-TGGCACG 11726 | |||| || || || || || |||||||| || | ||||||| | ||| || | Sbjct 1506 C-CTTC--GCCAAC-GCATCGATTTCATCGATAAAGATGATACACTGCGGGTACTGCGAG 1561 Query 11727 TGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAA 11786 ||||| ||| || || || || | | || || |||||| | |||||| || || Sbjct 1562 -GCCTGCGTGAAGAGGTCTCGCACTCTCGCAGCGCCTCGACCTACCAGCATCTCCACAAA 1620 Query 11787 GTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAG 11846 | | || ||||| | ||||| || | ||| || | |||| ||| || Sbjct 1621 ATCCGATGCTGAACAGAACAAGAAGGCCACCCCCGCTTCAGATGCAACAGCTCTAGCTAG 1680 Query 11847 GAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 || || || || || || | || |||| ||| | | || || | |||||| || Sbjct 1681 CAGCGTTTTGCCTGTGCCCGATGGACCACAGAGCATCACTCCTTTAGGCACCTTGGCGCC 1740 Query 11907 ACTTCCAAAGTAGC-GCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCT 11965 | | | ||| | | || || || | | ||||||||| | |||||| || |||| | Sbjct 1741 AATGGCCTGGTACCTGGTCGGGTGTC-TCAAGAAGTCCACGACCTCCTCCAGCTCCTTCC 1799 Query 11966 TGGCGGAGTCGATACCCTCAACATCG 11991 |||| ||| |||||| | |||||| Sbjct 1800 GGGCGCCGTCAATACCCGCCACATCG 1825 >seq952 Length=187182 Score = 82.4 bits (90), Expect = 9e-11 Identities = 117/163 (72%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 168430 TTACCACGGAGTGGAAATACCCCATAATGATCTCTACCCACGACGGAGAGACCAGCGACA 168489 ||||| || | || || || ||||| | |||||| || || |||| ||||| | ||| Sbjct 136853 TTACCGCGCAACGGGAAGACACCATAGTAATCTCTGCCAACCACGGCAAGACCGCCCACA 136912 Query 168490 GCGAGAGTTTTCGCTGAATCACCCTCTGTCACGATGAGTGTACACTTTCCAGACTGT--G 168547 |||| ||||| || ||||| || || || | ||| || || || | || || | | Sbjct 136913 GCGACGGTTTTGGCGGAATCTCCTTCCGTGAGGATCAGAGTGCAGT--CCTTGCTCTTCG 136970 Query 168548 CCGTACCAGCTTTGTTCGCATCGTCCAATTTGGGGATACCAGT 168590 |||||||||| ||||| ||||| |||| || ||||| || || Sbjct 136971 CCGTACCAGCGTTGTTGGCATCATCCAGCTTAGGGATGCCCGT 137013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588964102684800