Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq191 201 9e-47 seq1068 105 5e-18 >seq191 Length=126180 Score = 201 bits (222), Expect = 9e-47 Identities = 410/603 (68%), Gaps = 12/603 (2%) Strand=Plus/Plus Query 29791 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 29850 ||||| ||| ||||| || || || | || || ||||| || || || | |||| Sbjct 33236 AGCTGCTTCTGGAGCGGCTCGACATGGTTAAGATACACGTGGGCATCACCAATAACGTGG 33295 Query 29851 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29910 |||||||| || || | || || | || || || |||| ||| || | | |||| Sbjct 33296 ACAAACTCGCCAGGCTTCAGTCCACTCACCTGTGCTATCAGTCGCGTAAGCAACGCGTAG 33355 Query 29911 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 29970 ||||||||||| || || || || || |||||||| |||| | |||||| | ||| || Sbjct 33356 CTGGCGATGTTGAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAG 33415 Query 29971 GAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATG 30030 || | ||| |||||| |||||| ||||| || | |||| ||||| || || ||||| Sbjct 33416 GACAACTCGCCGTCGGCCACGTAGAACTGGCAGAACATGTGACACGGCGGGAGCGCCAT- 33474 Query 30031 AGGCCCA---AG-TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCT-TCTGGGT 30085 | || || || || ||||| || ||| | ||| || | ||| || | | Sbjct 33475 ---CTCATTGAGATCCGCCGGATTCCACGCCGACAGCACGATCCGACGGTCGGTCGGATT 33531 Query 30086 TGTTC-CTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCT 30144 ||| | | | | ||| | | | ||||| ||||| ||| || | |||||| Sbjct 33532 TGTGCGCAGCTT--GTCAATCACCTCAGCGAGCTGGTCCACGCCCTGACCAGTGTAGTCG 33589 Query 30145 GCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCC 30204 || |||||||||||||| |||||| ||||| | ||||||||| ||||| |||||||| Sbjct 33590 GCGTGCATGTCCGTGTACTTTGCTCCAAAATGACGCCACTGGAAGCCGTAGACCGGTCCG 33649 Query 30205 AGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTG 30264 ||||| || |||||| || | || | |||||| | | || | || || ||| Sbjct 33650 AGGTCGCCAACTTCCCGCGACTGCAGTCCTCGACTGTCCAGATACTCCCGCGATCCATTG 33709 Query 30265 GCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACG 30324 |||||||||| | | ||||||| ||| | | | ||| || |||| | Sbjct 33710 CCGTCCCAGATGTGGATATCCTTCTCCTGCAGCGTGTGCGCACTCGTGTCGCCACTGATG 33769 Query 30325 AACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGA 30384 |||||||||||||||||| | ||| | ||| ||||| | |||||||||||| | ||| Sbjct 33770 AACCACAGCAGCTCCTCCGCCACGCCGCGCCAGAAGACGCGCTTGGTCGTGAGCAAGGGG 33829 Query 30385 AAC 30387 ||| Sbjct 33830 AAC 33832 >seq1068 Length=45886 Score = 105 bits (116), Expect = 5e-18 Identities = 207/306 (68%), Gaps = 0/306 (0%) Strand=Plus/Minus Query 48329 GTCCACCTCCAGAACGGGAGGAGACTCGTACCTCTCGAGCACGAGCTGGGCTATCCTGTC 48388 |||||||||| | | || ||||| | ||||||| | |||||| || | | ||| Sbjct 20216 GTCCACCTCCTGGATCTCCGGGTACTCGATCTTCTCGAGGATGAGCTGCGCCACGCGGTC 20157 Query 48389 ACCCCTCTCGACCCGAAAGGGGTTGCACCCAAAGTTAAACAGTATGACGCCGAGGTTGCC 48448 || | || ||| | ||| | | | | ||| ||||| || ||||| | |||||| Sbjct 20156 TCCGCGCTTGACGGGGAAGTCCTCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCC 20097 Query 48449 CCTGTAGTCGGGGTCCACCACCCCGGCACCGACGTCTATAAAATTTTTCAGGGCCAGGCC 48508 | |||||||| ||| | ||| ||||| || ||| || || || || || || || || Sbjct 20096 GCGGTAGTCGGCGTCGATCACGCCGGCGCCCGTGTCGATGAACTTCTTGAGCGCGAGTCC 20037 Query 48509 GGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGGGGCATCTTCACGGCCAGGTCCGTCTT 48568 ||| | || ||||| | ||||| ||| ||| | | | ||||||||||||| Sbjct 20036 GGAGCGCGGCGCCACGCGCGCGTAGCAGCCGTCGGGTACGGCGATGACCAGGTCCGTCTT 19977 Query 48569 TACCAGGGCCCTGCCGAAGGAGGGGACCACGACCGGGTGAGCGGCCGCCAGGTCGTAACC 48628 || ||| || ||||| | ||||| |||| | || ||| |||| |||||| ||| Sbjct 19976 GACGAGGCCCTTGCCGCCCGCGGGGATCACGGCGTCGTAAGCAGCCGACAGGTCCAGACC 19917 Query 48629 CGCGGC 48634 |||||| Sbjct 19916 CGCGGC 19911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408609552276368