Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq926 358 1e-93 seq1029 192 1e-43 >seq926 Length=67561 Score = 358 bits (396), Expect = 1e-93 Identities = 1226/1892 (65%), Gaps = 83/1892 (4%) Strand=Plus/Minus Query 212595 TAGTACATGCCGGTCTTTAGGCCCTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTC 212654 ||||||||||||||||| || ||||| |||| ||| | |||||| | ||||| || Sbjct 31988 TAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATCGACGTGAGCTT- 31930 Query 212655 TTCAGCTTAATATTCTGGTCATCCTCGTGGCCCAGATGTAG--GTTCAGGGACTGACTCT 212712 ||| | | || |||| ||| ||||| | ||| || |||||||||| Sbjct 31929 ----GCTGA-TGGTCGGGTC--------GGC---GATGTGGATGTTGAGCGACTGACTCT 31886 Query 212713 GGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCC 212772 || ||| | | | | ||| || | || ||| | | | |||| || ||||| Sbjct 31885 GGCAAATGTACGCACCGCGGTCGGCCGACAGGTCCAGCACCGCCTTCTGCTTGATCTCCC 31826 Query 212773 ACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACC 212832 |||| |||||| | | || |||| || || |||| | || ||||||||| || | Sbjct 31825 ACACCGTCTTGTACTTCTCCTTGACGTGGTCCGGGATCGCCTTGACGTTCTGCACGGAGC 31766 Query 212833 CCCTGTGTATGGTCAGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTC---CA 212889 | |||| | | ||| ||||| |||| |||||| ||| | ||| || Sbjct 31765 CGCTGTCGTTCAAGATCTGGTTGCGCACGTCCGGCGTCCAGATGCC---GAGCTCGATCA 31709 Query 212890 GGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGT 212949 | ||| | ||||| |||||| ||| ||| || || | ||||| | | | || Sbjct 31708 GCTCCTTCATCAGGTACTTGTTGACGATCGTGAACTCTCCAGCCAGCACTCGGCGGTTGT 31649 Query 212950 AAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGG 213009 | | ||| || ||||| |||||||| ||||||||| || || ||||| || ||| | Sbjct 31648 ACATGTTGGACGTGTACGGCTCGATAGACTCGTTGTTTCCAAGGATCTGGGCCGTGGAAG 31589 Query 213010 CTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGG--CG 213067 | || |||||||| |||||||| || ||| | | |||||||| | || | | | Sbjct 31588 CCGTCGGCATGGGGGCCACCAGCAGCGAGTTGCGGAGTCCGTGCTTG---ATCACGTCCT 31532 Query 213068 CCGA-AGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGT 213126 || ||| ||||||| ||| | || ||| | | || ||| |||||||| Sbjct 31531 CCTTGAGCGTAGCCCAGTTCCACATACCCGAC--GACGGGGTG----ACGCCCCACATGT 31478 Query 213127 CAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCT 213186 | ||||| |||||||| ||||| |||| ||||||| | | ||| ||||| | | Sbjct 31477 CGAACTGGAAGATGCCCTTGCTAGCGGGCGAGCCCTGGAACGTCTCGTACGGGCCGAGTT 31418 Query 213187 CCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCC 213246 ||||||| | ||| |||| || || ||| ||| |||||||||| || || || | | Sbjct 31417 CCTTGGCGATCTCCATCGACGTCTCCATGGCGGCGAAGTAGATGGTCTCGAAGATGTTCT 31358 Query 213247 TGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAG 213306 ||||||||| | ||||| | | ||| | ||||| | ||| | || | Sbjct 31357 TGTTGAGCTCCCGGGCCTTCTCGCTCTCGAACGCGTAGTTCATGAGGATAAACGCGTCCG 31298 Query 213307 CCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCC 213365 | || |||||||| || || |||||||| | ||| | || ||| |||||| | || ||| Sbjct 31297 CGAGGCCCTGGACGCCAATACCGATGGGGCGGTGACGCATGTTGGACTTGCGCGC-CTCG 31239 Query 213366 TCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTG 213425 || |||||| ||||| |||||||| |||||| | |||||||||| |||| || || Sbjct 31238 ATCACGGGGTAGTAGTTGACGTCGATGACCTTGTTTAAGTTGCGGGTGACCACCTTCGTC 31179 Query 213426 ACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGG 213485 || | || | || || ||||| || || |||| ||| |||| |||||| Sbjct 31178 ACTTCATACAACTTCTGGTAGTTGAAAACT------CCTTCCTCCACGAACTTAGGCAGC 31125 Query 213486 GCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCG 213545 || | |||| |||||| || |||||||| | | ||||||||||| | ||| Sbjct 31124 GCCACAGACGCCAAGTTGCACACAGCCACCTCGTCCGGCGACGTGTACTCCATCACCTCA 31065 Query 213546 GTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCA 213605 ||| | ||||||| | ||||| ||||| ||||||| ||||| ||||| |||||| Sbjct 31064 CAGCATAAGTTGCTGGAGCGGATCGTGCCGAGGTTCTTCTGGTTCGACTTGCGGTTGGCC 31005 Query 213606 GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTC 213665 | |||||||| | ||| |||| || ||||| | ||||| ||| ||| | | Sbjct 31004 GCGTCCTTGTACAACATAAAGGGCACTCCCGTCTCAATCTGGGCGTCCAATATGGCGAAC 30945 Query 213666 CAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCG 213725 || || | | ||| |||| | | | | | ||| ||| |||||||| ||| Sbjct 30944 CACAGCTGCTGGGCGTTGATCGTCTTGCGGGCGCGTCCCTCCGT---CTCGTACTTTTCA 30888 Query 213726 TAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCG---GGA 213782 ||||| | | |||||||| ||||||| | | ||||| || || || || Sbjct 30887 TAGAGGGCCTCGAATTCGTCGCCCCAGCACTCATAGAGTCCAGG---GGCCTCGTTAGGG 30831 Query 213783 CACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCAC 213842 || ||| ||||| | || | || || |||| ||||||||| || || ||||| Sbjct 30830 CAATAGAGACTCCACTTGCCATTGGCTTCCACCCTCTTCATGAACAGATCAGGCACCCAA 30771 Query 213843 AGCGCGGTGAACAGGTCCCTGGTCC---TCCTCTCGTCCACTCCAGAGTTTTTGCGCAGA 213899 || ||| ||||||||| | | | | ||||| || ||| || || || Sbjct 30770 AGGGCGTAGAACAGGTCGCGAGCGCGGTGCAACTCGT---TGCCGTGGTTCTTACGGAGG 30714 Query 213900 TCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGC 213959 || | || || || | || |||||||| ||||||| |||||||| |||| |||| Sbjct 30713 TCCAAGAACTCGAACACATCTGCGTGCCAAGGCTCCAAATAGATGGCGAAGGAGCCCTTA 30654 Query 213960 CTCTTG---CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGT 214016 | |||| |||||||||||||| || || ||| || | ||||| | ||| Sbjct 30653 CGCTTGCCTCCGCCCTGGTCCACGTACCGCGCGGTGTCGTTAAACACCCGCAGCATGGGG 30594 Query 214017 ACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTG 214076 | | || |||||| ||||| || || || || | || ||| | | |||| Sbjct 30593 ATGATGCCATTGGACGAGCCGTTCGTGCCTCGGATGTAGCTGTTGGTGGCTCGGATGTTG 30534 Query 214077 CTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTC 214136 ||| || || || || ||||| | || ||||| ||| || || | | || Sbjct 30533 TGCATACTGATGCCAATACCTCCGGCCCATTTAGAGATACAGGCACATTGCTTTAACGTG 30474 Query 214137 TCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGG 214196 || ||||| | || ||| ||| | | || | |||||| ||| || || Sbjct 30473 TCGTAAATGCCTTCAATTGAGTCGTCTTGCATGGCCAATAGGAAGCAAGACGACAGTTGT 30414 Query 214197 GGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAG 214256 || | | || ||| | ||| ||||| || ||| ||||||| | | |||| | | || Sbjct 30413 GGGCGCGGCGTGCCGGCGTTAAAAAGTGTCGGGGTGGCATGCGTGAAAAACATTTGCGAC 30354 Query 214257 AGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCAC 214316 | ||| ||| ||||||||| | | | |||| | ||||||||| || || ||| Sbjct 30353 ATAAGCTCGTACGTCTCCAGGGCGGCCGCAATGTTGCTCTTGTGGATGCCAAGTGC-CAC 30295 Query 214317 -CTCATCAGCATGTGCTGGGGCCTCTCTATGGGTCCTTTGGGGCCCTT------GAGCAG 214369 | ||| | ||| ||||| || | ||| | |||| ||| || || || Sbjct 30294 GCGCATAATCATTTGCTGCGGACGCTCCA---CCACTTT---GCCGTTTACGCGGAAGAG 30241 Query 214370 GTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAGGAGTAGGTATGATCGTTCC---CGTG 214426 ||| |||||| ||||| || |||||||||||| ||| || | || || |||| Sbjct 30240 GTACCCGCGCTCGAGAGTTTTAAACCCAAAGTAGTCGTA---ATCAAAGTCCCGGTCGTG 30184 Query 214427 TATGAGGGCAGCGTCCAGCTCTTCCGCGTGCT 214458 |||| ||| | || |||||| ||| ||||| Sbjct 30183 GATGATGGCCGAGTTCAGCTCGTCCTTGTGCT 30152 >seq1029 Length=318196 Score = 192 bits (212), Expect = 1e-43 Identities = 485/730 (66%), Gaps = 17/730 (2%) Strand=Plus/Minus Query 47953 CAGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTAT 48012 |||||| | || || ||| |||||||||||| ||||||| | ||||||||| || Sbjct 189583 CAGCAGACGGTCGGCCACGAACTCGATGTATTGGCACATGAGCGCCGAGTTCATGCCGAT 189524 Query 48013 GAGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCAC 48072 ||| || | | | | ||||| | ||| ||| ||| | || | ||| Sbjct 189523 CGACTCCACAGGGAGCGAGTCACGCACGAACTCGTGCTCGATCGTCACCCCGTCGCGCAC 189464 Query 48073 AATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCA 48132 |||| | |||||| | | | | ||||| ||| ||||| || | | ||| Sbjct 189463 GATCTCGTGCACGCGGCTCCCCGGCAGCTTGTTCACCAG---CTTGGAGTACATGAGGCA 189407 Query 48133 GGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACC 48192 || |||||| |||||| ||| ||||| |||||||| ||| |||| ||||||| || || Sbjct 189406 CGCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCC 189347 Query 48193 AGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGAT 48252 |||| ||| || | || ||||||||||| || | ||| ||||| ||||||||||| Sbjct 189346 AGGCGTGAGGCCGCGCTTCTTGAGCCAGAAGATCGAGCAGAACGAGCCCGAGAAGAAGAT 189287 Query 48253 GCCCTCCACTGCCGCGAACGCGGTGAGC-CTCTCTCC--GAAAGAAG-CGTTCTTGTCTG 48308 ||||||||| | |||||| || ||| | | |||| | | || | | || | | Sbjct 189286 GCCCTCCACGGTTGCGAAC---GTCAGCACGCGCTCCGGGTACGACGACACTCGCGGGT- 189231 Query 48309 AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCC 48368 | ||| |||||||||| || |||||||| | || || ||||| || ||||| | Sbjct 189230 CGCACCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGAATCGTATCGATGGCAC 189171 Query 48369 GGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGT 48425 | | || | | ||| || ||| | || || | |||||||| | | Sbjct 189170 GCAGCAGGTGGTCCTTCTCCGTCGCATCCTTGATGTACGTGTCAATGAGCAGC---GAAT 189114 Query 48426 ACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAA 48485 ||| ||| ||||| | ||||| || ||||||||||| ||||||||| | |||||| Sbjct 189113 ACACCTCTGAGTGGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCAGCGGGCCTCCG 189054 Query 48486 ACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAG 48545 ||||||||||| || ||| || ||| ||||| || || || || || | Sbjct 189053 GTACCTGCACTTCATTGCTGAAGTTCATGGCCAGGTTCTCGTTCACGATGCCGTCGCTGG 188994 Query 48546 CAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCC 48605 |||| |||||||| || || || || | ||| |||||||||| || || || Sbjct 188993 CAGCGAAGAAGGCCAGCACGTGCTTGATGAAGAACCGCTCGTTGTCCGTCAGGTTCGCCC 188934 Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTT 48665 || ||| | ||| | ||||||||| || || | |||||||| || || |||| Sbjct 188933 AGTCCTTCAGGTCGTGCACCAGGTCCAGCTCCTCGGCCGTCCAGAACGAGGCCTCCGCTT 188874 Query 48666 TTTTGTACAT 48675 | |||||||| Sbjct 188873 TCTTGTACAT 188864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931513983037440