Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1029 183 6e-41 seq926 127 4e-24 >seq1029 Length=318196 Score = 183 bits (202), Expect = 6e-41 Identities = 382/560 (68%), Gaps = 12/560 (2%) Strand=Plus/Plus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| ||||||||||||| || | ||| |||||| ||||| ||| | || |||| Sbjct 188858 TGGCAGATGTACAAGAAAGCGGAGGCCTCGTTCTGGACGGCCGAGGAGCTGGACCTGGTG 188917 Query 25540 AAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACGTG 25599 | ||| || | | |||| || | | |||||| | || ||||| ||||| Sbjct 188918 CACGACCTGAAGGACTGGGCGAACCTGACGGACAACGAGCGGTTCTTCATCAAGCACGTG 188977 Query 25600 TTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACC 25659 |||| ||||| || ||| || || || ||||||||||| ||| | || |||| | Sbjct 188978 CTGGCCTTCTTCGCTGCCAGCGACGGCATCGTGAACGAGAACCTGGCCATGAACTTCAGC 189037 Query 25660 AGGGAAGTGCA-GTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAA 25718 | |||||||| |||| ||||||| || ||||||||||||||||| |||||||| || Sbjct 189038 AATGAAGTGCAGGTAC-CGGAGGCCCGCTGCTTCTACGGTTTCCAGATCGCCATCGAGAA 189096 Query 25719 TGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGTCGCCGA 25775 | ||||| ||||||||| | ||| || || |||||||| | || | | || Sbjct 189097 CATCCACTCAGAGGTGTATTC---GCTGCTCATTGACACGTACATCAAGGATGCGACGGA 189153 Query 25776 GAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTG 25835 || || | ||| | |||||||||| || || | | |||| ||| |||| || Sbjct 189154 GAAGGACCACCTGCTGCGTGCCATCGATACGATTCCGTGTGTGAAGAAGAAAGCGCACTG 189213 Query 25836 GGCCATGAAGTGGATC-AACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTG 25894 ||| | |||||| | | | || || | | ||| ||||| || | | || | Sbjct 189214 GGCGCTCAAGTGGTGCGACCCGCGAGTG-TCGTCGTACCCGGAGCGCGTGCTGACGTTCG 189272 Query 25895 CTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCAG 25953 | | |||||||||||||| ||| || ||||| ||| | ||||||||||||||| || Sbjct 189273 CAACCGTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGC-TCGATCTTCTGGCTCAAGAAG 189331 Query 25954 AAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTC 26013 || || ||| || ||| ||| || |||||||| |||||| | |||||||| | Sbjct 189332 CGCGGCCTCACGCCTGGCCTGAGCTTCTCGAACGAGCTGATCAGCCGTGACGAGGGCATG 189391 Query 26014 CACAGAGATTTTGCCTGCCT 26033 |||| || || || ||||| Sbjct 189392 CACACGGACTTCGCGTGCCT 189411 >seq926 Length=67561 Score = 127 bits (140), Expect = 4e-24 Identities = 803/1281 (63%), Gaps = 59/1281 (5%) Strand=Plus/Minus Query 221419 CAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCT-----CG 221473 || ||| ||| |||||||||||| ||||| |||||||||| | ||||| | Sbjct 31392 CATGGCGGCGAAGTAGATGGTCTCGAAGATGTTCTTGTTGAGCTCCCGGGCCTTCTCGCT 31333 Query 221474 GGAGAA-GTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGAT 221532 ||| | | || ||| || || ||| |||| || || ||||| || || || Sbjct 31332 CTCGAACGCGTAGTTCATG---AGGAT---AAACGCGTCCGCGAGGCCCTGGACGCCAAT 31279 Query 221533 ACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGAC 221592 ||||||||| | ||| | | ||||||| | ||| || |||||| || ||||||| Sbjct 31278 ACCGATGGGGCGGTGACGCATGTTGGACTTGCGCGCCTCGATCACGGGGTAGTAGTTGAC 31219 Query 221593 GTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTG 221652 |||||| | ||||| | ||| | |||| || || ||| || || |||||||| Sbjct 31218 GTCGATGACCTTGTTTAAGTTGCGGGTGACCACCTTCGTCACTTCATACAACTTCTGGTA 31159 Query 221653 ATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGG----GCAA 221708 ||||| ||||| | || | |||| || ||||| || | Sbjct 31158 GTTGAA----AACTC-----CTTCCT---------CCACGAAC----TTAGGCAGCGCCA 31121 Query 221709 CGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTAC 221768 | |||| ||| ||||| |||||||||||| || |||| || | ||| | Sbjct 31120 CAGACGCCAAGTTGCACACAGCCACCTCGTCCGGCGACGTGTACTCCATCACCTCACAGC 31061 Query 221769 AGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGT 221828 | | ||||||| | ||| || || |||| || || || |||||||| ||||| |||| Sbjct 31060 ATAAGTTGCTGGAGCGGATCGTGCCGAGGTTCTTCTGGTTCGACTTGCGGTTGGCCGCGT 31001 Query 221829 CCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGA 221888 ||||||| | ||||||||| | || ||||| | ||| || ||| || | ||| | Sbjct 31000 CCTTGTACAACATAAAGGGCACTCCCGTCTCAATCTGGGCGTCCAATATGGCGAACCACA 30941 Query 221889 GTTCTCTGGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGA 221948 | | |||| | | |||| | | | ||||| ||| || ||| ||||| Sbjct 30940 GCTGCTGGGCGTTGATCGTCTTGCGGGCGCGTCCCTCCGTC---TCGTACTTTTCATAGA 30884 Query 221949 GCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCA 222008 | || || | || || | ||| | || || || | | || || | Sbjct 30883 GGGCCTCGAATTCGTCGCCCCAGCACTCATAGAGTCCAGGGGCCTCGTTAGGGCAATAGA 30824 Query 222009 GACTCCAGTGCTTG---TTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCG 222065 ||||||| |||| ||| ||| ||||||| |||||| || || || | ||| || | Sbjct 30823 GACTCCA---CTTGCCATTGGCTTCCACCCTCTTCATGAACAGATCAGGCACCCAAAGGG 30767 Query 222066 CCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAA 222125 | | || || || | | || ||| ||| ||||| ||| || | || ||||| | Sbjct 30766 CGTAGAACAGGTCGCGAGCGCGGTGCAACTCGTTGCCGTGGTTCTTACGGAGGTCCAAGA 30707 Query 222126 ACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGT 222185 |||| || | || |||||||| ||||||| ||||| ||| | | ||| |||||| Sbjct 30706 ACTCGAACACATCTGCGTGCCAAGGCTCCAAATAGATGGCGAAGGAGCCCTTACGCTTGC 30647 Query 222186 TGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTC 222245 || ||||| ||||| || | | |||| || | || || | || | | | Sbjct 30646 CTCCGCCCTGGTCCACGTACCGCGCGGTGTCGTTAAACACCCGCAGCATGGGGATGATGC 30587 Query 222246 CGTTGGATCGA-CCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCA 222304 | ||||| ||| ||||| ||||| ||||| | ||| | | ||| ||| Sbjct 30586 CATTGGA-CGAGCCGTTCGTGCCTCGGATGTAGCTGTTGGTGGCTCGGATGTT--GTGCA 30530 Query 222305 GAC--ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCA 222362 || ||||| ||||| ||||| ||| ||||| ||| || ||| | ||||| Sbjct 30529 TACTGATGCCAATACCTCCGGCCCATTTAGAGATACAGGCACATTGCTTTAACGTGTCGT 30470 Query 222363 TGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATT 222422 ||||| || || ||||| || | | | || || || |||||||||| || | Sbjct 30469 AAATGCCTTCAATTGAGTCGTCTTGCATGGCCAATAGGAAGCAAGACGACAGTTGTGGGC 30410 Query 222423 TGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCA 222482 | | | ||||||||| || || || |||| || || || | ||||| | Sbjct 30409 GCGGCGTGCCGGCGTTAAAAAGTGTCGGGGTGGCATGCGTGAAAAACATTTGCGACATAA 30350 Query 222483 GATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCA 222542 | ||||||||||| | | | || |||||| | ||| || | || | || Sbjct 30349 GCTCGTACGTCTCCAGGGCGGCCGCAATGTTGCTCTTGTGGATGCCAAGTGCCACGCGCA 30290 Query 222543 TGTACATGTACTGGGGCCTCTCCACAGGACCCTTGGAGCT---GGAGAGCAGGTACGATT 222599 | ||| | ||| || | |||||| | ||| | | | || |||||| Sbjct 30289 TAATCATTTGCTGCGGACGCTCCAC---CACTTTGCCGTTTACGCGGAAGAGGTACCCGC 30233 Query 222600 TTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGG 222659 || ||||| || ||||||||||||| | |||||||| | | |||| | | ||| | Sbjct 30232 GCTCGAGAGTTTTAAACCCAAAGTAGTCGTAATCAAAGTCCCGGTCGTGGATGATGGCCG 30173 Query 222660 CGTCCAGCTCCGACTTGTGCT 222680 || |||||| |||||||| Sbjct 30172 AGTTCAGCTCGTCCTTGTGCT 30152 Score = 105 bits (116), Expect = 1e-17 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 221095 CAGCACCTTGACCATGTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTG 221154 |||| |||| | || || |||||| || | ||| ||||| | ||||| | | | Sbjct 31710 CAGCTCCTTCATCAGGTACTTGTTGACGATCGTGAACTCTCCAGCCAGCACTCGGCGGTT 31651 Query 221155 GTACAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCT 221214 ||||| ||| || ||| |||| ||||| ||||||||| || |||||||| |||||| Sbjct 31650 GTACATGTTGGACGTGTACGGCTCGATAGACTCGTTGTTTCCAAGGATCTGGGCCGTGGA 31591 Query 221215 GGCGGTGGGCATGGGTGCCACCAGCAGACTGTTGCGCAGTCCG 221257 || || |||||||| ||||||||||| |||||| |||||| Sbjct 31590 AGCCGTCGGCATGGGGGCCACCAGCAGCGAGTTGCGGAGTCCG 31548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928826037335040