Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1029 100 3e-16 seq952 95.1 1e-14 >seq1029 Length=318196 Score = 100 bits (110), Expect = 3e-16 Identities = 193/282 (68%), Gaps = 2/282 (1%) Strand=Plus/Plus Query 64948 ATTGACAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAACT 65007 ||||||| ||||| ||||||| | || ||| | || | | |||||| | || Sbjct 189125 ATTGACACGTACATCAAGGATGCGACGGAGAAGGACCACCTGCTGCGTGCCATCGATACG 189184 Query 65008 GTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAA-AGTCTCG 65066 | || ||| | ||||||| ||| | ||||| | || |||| ||| | ||| ||| Sbjct 189185 ATTCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGAGTGTCG 189244 Query 65067 CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTC 65126 || | | | |||||| | | |||| || |||||||| ||||||||||| || || Sbjct 189245 -TCGTACCCGGAGCGCGTGCTGACGTTCGCAACCGTGGAGGGCATCTTCTTCTCGGGCTC 189303 Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186 |||||| | || | ||| | |||||||| || |||| ||| ||||| ||||||| || Sbjct 189304 GTTCTGCTCGATCTTCTGGCTCAAGAAGCGCGGCCTCACGCCTGGCCTGAGCTTCTCGAA 189363 Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 || || || ||| || ||||| | ||| ||| || || Sbjct 189364 CGAGCTGATCAGCCGTGACGAGGGCATGCACACGGACTTCGC 189405 >seq952 Length=187182 Score = 95.1 bits (104), Expect = 1e-14 Identities = 241/358 (67%), Gaps = 8/358 (2%) Strand=Plus/Minus Query 14430 TGAAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACCACCATGGTGAAG 14489 |||||||||||||| |||| | ||||| | || | || |||||||| || || || | Sbjct 135990 TGAAGGTGGCACAATTGGCTGGTTATGTGTCAGAGCACTCCGCGTACCATCACGGCGA-G 135932 Query 14490 TATCCTTAGC-GGACACGATTGTTAAGTTGGCAAACGACTACACGGGTTCAAACAACATT 14548 | || || || | || || || |||| | |||| || |||||||| Sbjct 135931 CAGAGTTTGCAGGGCTGTATCGTCAACATGGCTCAGGACTTTGTCGGAAGCAACAACATC 135872 Query 14549 AACCTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGTAAGGATGCTTCT 14608 |||| || || ||||| || ||||||||| | ||||| || |||||||| | Sbjct 135871 CACCTCCTGTCGCCAATCGGTCAGTTCGGTACGCGTTTGATGGGCGGCAAGGATGCAGC- 135813 Query 14609 CAGA-CGAGGTACATTTTCACAAAACTT--ACCAAGGAGGCTCGCAAGATCTTTGATCCT 14665 ||| | | || |||||||| || ||| | ||| ||||| ||||| ||||||| Sbjct 135812 CAGCGCTCGTTATATTTTCACGAA-CTTGGAACAACTCA-CTCGCCGGATCTATGATCCT 135755 Query 14666 CGGGATGACCCGATCCTCAACTACTTGGACGATGATGGACGCTCCATTGAACCAGACTTT 14725 | || | | ||| | ||||||||||| || || | || ||||| || || | Sbjct 135754 CTTGACAATGATGTGCTCGAATACTTGGACGAAGACGGTCAATCAATTGAGCCGGAATGG 135695 Query 14726 TACATGCCAACTTTACCAATGGTTCTCGTGAATGGAACCGAGGGTATCGGTACGGGTT 14783 || || || | | | |||||||| || || || || | ||| |||||||| ||||||| Sbjct 135694 TATATCCCGATTATCCCAATGGTACTTGTCAACGGCAGCGACGGTATCGGAACGGGTT 135637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596557549294080