Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq914 125 2e-23 seq797 96.9 1e-14 seq1329 95.1 4e-14 seq981 84.2 6e-11 >seq914 Length=62445 Score = 125 bits (138), Expect = 2e-23 Identities = 183/255 (72%), Gaps = 8/255 (3%) Strand=Plus/Minus Query 302593 CGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGA 302652 ||||||||||| |||||||| | || || ||||| |||||||| ||||| ||||| Sbjct 52808 CGACGCTGAATGTAACCAGTCTCGGCCGTCTTCACAGCCGTATCAATCAGACCTTCACGA 52749 Query 302653 CCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCA 302712 |||||||| || ||||| || | |||| ||| | ||| | | || |||| Sbjct 52748 CCACCCATGGCGTGGAAAAAGAATTCTTGAGGTGTCAAACCCTTCAGGTACGAATTCTCC 52689 Query 302713 ACGAAACCACGCGCCTCGGG--CGAATCGTCGAACTTG--GTAAAGTGTGGCAGGGTCCT 302768 ||||||||||| || || | || ||| |||| |||| || ||||| || | Sbjct 52688 ACGAAACCACGACTTTCCGGACCCAA--GTCATCCTTGCCGTAA--TGCGGCAGCGTACG 52633 Query 302769 GTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAAT 302828 || | | | ||||| |||||||||||||| || ||||||||||| |||| || | ||| Sbjct 52632 GTGGTTAAAACCGTACGGGATACGCTTTCCTTCCACGTTCTGCTGGCCCACACAAGCAAT 52573 Query 302829 CATCTGCGAAATATT 302843 |||||||| ||||| Sbjct 52572 AATCTGCGAGATATT 52558 >seq797 Length=81402 Score = 96.9 bits (106), Expect = 1e-14 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 251488 CCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCC 251547 ||||| || | || |||||| |||||||| || || | ||| || ||||| |||||||| Sbjct 58636 CCGTGCGAGACCAGACAATCGCGCTCCATCTCTCCCATACGCAGGCCACCTTCGCGAGCA 58695 Query 251548 CTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGC 251607 | |||||| ||||| || || || | || ||||| ||||| || | Sbjct 58696 CGACCCTCCATGGGCTGGCGCGTCAGCATGGTCACGGGACCACGCGAGCGCGAGTGGATC 58755 Query 251608 TTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 || || | ||||||||||| || ||||||||||| | ||| ||||||||||| Sbjct 58756 TTGTCGTCGACCATATGCTTCAGGCGCTGGTAGAACGTGGGTCCGATGAAGAT 58808 >seq1329 Length=147112 Score = 95.1 bits (104), Expect = 4e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 354003 CTTAATTGCTGTGGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTC 354062 ||| || || | || || |||||||||||||| ||||| ||| | || || || || || Sbjct 132101 CTTGATGGCCGAAGCAAGGGCACCAAGCGAGTCGCGGTCAAGGTAGTTCGTCGGCTCATC 132042 Query 354063 AAGGATAAGAACGTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTG 354122 ||| | ||| | |||||| | || |||||| || ||||| || || ||||| |||||||| Sbjct 132041 AAGCACAAGGATGTGCGGGTTCAGCCACATAGCGGCAGCGAGCACGACCTTCACCTTCTG 131982 Query 354123 TCCGCCTGATAG 354134 || || || || Sbjct 131981 ACCACCGGACAG 131970 >seq981 Length=59379 Score = 84.2 bits (92), Expect = 6e-11 Identities = 68/80 (85%), Gaps = 2/80 (3%) Strand=Plus/Plus Query 410494 TGACGCAATGGATAGCGTGCCAGACTTCTAATCTGGAAGTTGCGGGTTCGAGTCCCGTCG 410553 || ||||||||||||||| |||||||| ||||||| ||||||||||||||||||| || Sbjct 25645 TGGCGCAATGGATAGCGTATCAGACTTCGAATCTGGGGGTTGCGGGTTCGAGTCCCG-CG 25703 Query 410554 T-GGGTAAtttttttAATTT 410572 | | ||| |||| || |||| Sbjct 25704 TCGCGTACTTTTATTCATTT 25723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471787126016592