Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq926 136 4e-27 seq784 100 3e-16 seq147 86.0 6e-12 >seq926 Length=67561 Score = 136 bits (150), Expect = 4e-27 Identities = 365/551 (66%), Gaps = 29/551 (5%) Strand=Plus/Minus Query 138474 CTTGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCG 138533 || ||||| || || ||||| || |||| | || | || || || |||| ||||| Sbjct 31716 CTCGATCAGCTCCTTCATCAGGTACTTGTTGACGATCGTGAACTCTCCAGCCAGCACTCG 31657 Query 138534 ACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGC 138593 || ||| |||||| ||| | ||||| | || ||||||||||| || ||||| || Sbjct 31656 GCGGTTGTACATGTTGGACGTGTACGGCTCGATAGACTCGTTGTTTCCAAGGATCTGGGC 31597 Query 138594 CGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGAT 138653 ||||| || ||||||||| ||||||| || || || || | |||| ||||||| Sbjct 31596 CGTGGAAGCCGTCGGCATGGGGGCCACCAGCAGCGAGTTGCGGAGTCCGT---GCTTGAT 31540 Query 138654 -TCGT--TCCTTGAGCGACGACCAGTCCCACAAATC--GCTA-GGTTTTTTGTTCCACAT 138707 ||| |||||||||| | ||||| ||||| | | | | || | | |||||| Sbjct 31539 CACGTCCTCCTTGAGCGTAGCCCAGTTCCACATACCCGACGACGGGGTGACGCCCCACAT 31480 Query 138708 ATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAA 138767 ||| |||| || || ||| || ||||| ||| | | ||| ||||| || | Sbjct 31479 GTCGAACTGGAAGATGCCCTTGCTAGCGGGCGAGCCCTGGAACGTCTCGTACGGGCCGAG 31420 Query 138768 CTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTG 138827 || | || | ||| | || ||| | || | |||| || || ||| || | Sbjct 31419 TTCCTTGGCGATCTCCATCGACGTCTCCATGGCGGCGAAGTAGATGGTCTCGAAGATGTT 31360 Query 138828 CTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACG------GCATGCGGAGCATCGTGAA 138881 || |||||| ||||||| |||||||| ||| |||| ||| | || Sbjct 31359 CTTGTTGAGCTCCCGGGCCTTCTCGCTCTCGAACGCGTAGTTCATGAGGA------TAAA 31306 Query 138882 CGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTT 138941 |||||| || || || || ||||| | |||| ||||| || |||| || ||| | Sbjct 31305 CGCGTCCGCGAGGCCCTGGACGCCAATACCGATGGGGCGGTGACGCATGTTGGAC----T 31250 Query 138942 TGCG-GCTTCGAT---AGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGA 138997 |||| || ||||| || || ||||| || ||||||| |||||||| || || || Sbjct 31249 TGCGCGCCTCGATCACGGGGTAGTAGTTGACGTCGATGACCTTGTTTAAGTTGCGGGTGA 31190 Query 138998 CCACCTTAGTC 139008 ||||||| ||| Sbjct 31189 CCACCTTCGTC 31179 >seq784 Length=83642 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || || || ||||| || || || | | Sbjct 19012 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 18953 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || |||||||| ||||| || || || || || || || Sbjct 18952 GACTCGATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 18893 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| || || || ||||| ||||| | | || || || ||| Sbjct 18892 CAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAAC 18833 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||| ||||| ||||| || ||| ||||| |||| Sbjct 18832 ATTCAGAAGGAGTCGACGCTGCACCTGGTGCTGCG 18798 >seq147 Length=128699 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || ||||| || || || | || Sbjct 64985 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 64926 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||| | || | || || || || ||||| ||||| || || || || || || || Sbjct 64925 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 64866 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || ||| ||||||| ||||| || ||||| ||||| Sbjct 64865 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGA 64831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449888512068480