Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_022059.1 Length=77367 Score E Sequences producing significant alignments: (Bits) Value seq787 136 2e-27 >seq787 Length=83116 Score = 136 bits (150), Expect = 2e-27 Identities = 384/587 (65%), Gaps = 12/587 (2%) Strand=Plus/Minus Query 67628 CGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCG 67687 || || |||||||||||||| || ||| || || ||| | |||||| || | Sbjct 18827 CGTGTGGTGGAGATCTACGGCCCCGAGAGCTCCGGCAAGACGACGTTGGCACTGAGCTGC 18768 Query 67688 GTGGCCAATGCCCAGAAGGCCGGTGGCAACGCC---GCCTACATCGACGCCGAACATTCT 67744 | || | || |||||| | | ||| | | |||| ||||||||| ||||| | Sbjct 18767 ATTGCTGAGGCTCAGAAGACGGAGGGCGGAGTCTGCGCCTTCATCGACGCAGAACACGCC 18708 Query 67745 CTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAG 67804 | ||| | | |||||| ||| || || || || | ||| || || |||| Sbjct 18707 ATTGACGCCCACTACGCCAAGGCTCTGGGTGTCGACATTGACGCGCTGTACGTCTCGCAG 18648 Query 67805 CCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTT 67864 || ||| | ||||| | || |||||||||| ||| ||| ||| ||| || | ||| Sbjct 18647 CCGGACTCGGGCGAAGAAGCTCTGGAGATCGCCGACACGCTCATCAGGTCGGGAGCGGTG 18588 Query 67865 TCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGAC 67924 | || | || ||||| |||||| || ||||||||||| |||||||| || || || Sbjct 18587 GACCTCGTGGTGCTGGACAGTGTGGCAGCGCTGGTGCCGCGTGCGGAGCTGGAGGGTGAA 18528 Query 67925 ATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTG 67984 || || ||| ||| | | ||||| || || || ||| |||||| |||| ||||| Sbjct 18527 ATGGGAGACCAGCAGATTGCACTGCAGGCGCGACTCATGAGTCAGGCGCTGCGAAAGCTC 18468 Query 67985 ACCGGCACGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAG 68044 || || || | ||| ||||| || | | |||| ||| | ||| ||||| Sbjct 18467 ACGGGGTCGCTGTCCAAGTCCAACTGCACCATTATCTTCCTGAACCAGATTCGCCAGAAG 18408 Query 68045 ATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTC 68104 | || | | | || ||| | |||| || | ||||| | |||||||| | | Sbjct 18407 GTGGGAATCAT---CTTCGGATCTCCTGAGGTTACGTCGGGTGGAACAGCTCTGCGTTAC 18351 Query 68105 TACGCCTCGGTGCGTATGGA---TGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGAG 68161 ||||| || || | |||| | |||| || |||| | ||||| ||||| || Sbjct 18350 TACGCGTCTGTAAGGCTGGACATTCGTCGCAAGACGGCCATC---AAGGAGGGCGACCAG 18294 Query 68162 GCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGC 68208 | |||||||||| ||| |||||||| | ||||||||| || || Sbjct 18293 GTTGTCGGCAACGAAACGGTGGTGAAGGTGGCCAAGAACAAACTTGC 18247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 247444726480128