Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq147 132 3e-26 seq784 123 2e-23 seq868 105 4e-18 >seq147 Length=128699 Score = 132 bits (146), Expect = 3e-26 Identities = 149/197 (76%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| |||||||| || |||| | || || || ||||| |||||||||| Sbjct 64796 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 64855 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 |||| || |||||||| |||| | ||||||||||| | ||||| || ||||| || Sbjct 64856 TCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGAC--AT- 64912 Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || || | ||| || || | || |||||||| ||||| |||||||| Sbjct 64913 -TGTCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTC 64971 Query 34964 ACAAAGATCTGCATGAT 34980 ||||||||||||||||| Sbjct 64972 ACAAAGATCTGCATGAT 64988 >seq784 Length=83642 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | || ||||||||||||||| ||||| || |||| | || Sbjct 18800 CAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCGTC 18859 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || ||||||||||| || |||||||| |||| | ||||||||||| Sbjct 18860 CTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTC 18919 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || |||||| | ||||| || | ||| || || | || || || Sbjct 18920 CTGGATCTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGT 18979 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| ||||| || ||||| || ||||||||||| Sbjct 18980 CTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 19012 >seq868 Length=80962 Score = 105 bits (116), Expect = 4e-18 Identities = 82/98 (84%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | |||||||||||||| ||||| |||||||| ||| |||| | || Sbjct 33842 AGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCC 33901 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 ||||| ||||| |||||||||||||| || |||||||| Sbjct 33902 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 33939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325686385480304