Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq926 419 2e-112 seq784 152 5e-32 seq147 134 1e-26 seq1029 111 2e-19 >seq926 Length=67561 Score = 419 bits (464), Expect = 2e-112 Identities = 1219/1850 (66%), Gaps = 64/1850 (3%) Strand=Plus/Minus Query 147953 GCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGACGA 148012 ||||| ||||||||||| |||||||| ||| | ||| |||||| ||||| ||||| Sbjct 31995 GCGCATGTAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATCGACG- 31937 Query 148013 CATGAGCGTGTAC---GTCGGGTGCGGC-ACAAACAGATTAAACGACTGGCTCTGGTCAA 148068 ||||| || ||||||| |||| | | || | |||||| |||||| || Sbjct 31936 --TGAGCTTGCTGATGGTCGGGT-CGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAA 31880 Query 148069 TGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTAT-CTTCATCTCCCAGGCC 148127 || |||| || ||||| || | || || | | ||| || | ||| |||||||| || Sbjct 31879 TGTACGCACCGCGGTCGGCCGACAGGTCCAGCAC-CGCCTTCTGCTTGATCTCCCACACC 31821 Query 148128 GTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGCGG 148187 ||||||||| | ||||| || || || || | | || | |||||| ||||||| | Sbjct 31820 GTCTTGTACTTCTCCTTGACGTGGTCCGGGATCGCCTTGACGTTCTGCACGGAGCCGCTG 31761 Query 148188 TGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCATCG 148247 | || ||||| ||||||| || ||| | | | |||||||||||| || | Sbjct 31760 TCGTTCAAGATCTGGTTGCGCACGTCCGGCGTCCAGATGCCGAGCTCGATCAGCTCCTTC 31701 Query 148248 ATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTG 148307 ||||| |||| || || | | ||||| || || ||||| || || |||| |||| Sbjct 31700 ATCAGGTACTTGTTGACGATCGTGAACTCTCCAGCCAGCACTCGGCGGTTGTACATGTTG 31641 Query 148308 CTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGC 148367 ||| |||| || | ||||||||||| || | ||||| || || | ||||| ||| Sbjct 31640 GACGTGTACGGCTCGATAGACTCGTTGTTTCCAAGGATCTGGGCCGTGGAAGCCGTCGGC 31581 Query 148368 ATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCC 148427 ||| || ||||||||||||||||| | ||| | || | | | ||| || | Sbjct 31580 ATGGGGGCCACCAGCAGCGAGTTGCGGAGTCCGTGCTTGATCACGTCCTCCTTGAGCGTA 31521 Query 148428 GCCCAGTCCCAGA---GCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCG 148484 ||||||| ||| | || |||||| || ||| |||||||||| |||| | ||||| Sbjct 31520 GCCCAGTTCCACATACCCGACGACGGGGTGACGCCCCACATGTCGAACTGGAAGATGCCC 31461 Query 148485 CGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAG 148544 ||||||||| ||||| | ||| |||||| ||| | || || | || || Sbjct 31460 TTGCTAGCGGGCGAGCCCTGGAACGTCTCGTACGGGCCGAGTTCCTTGGCGATCTC-CAT 31402 Query 148545 C-TCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGC 148603 | || ||| | ||| || |||| || |||||| || | | |||||||| | || Sbjct 31401 CGACGTCTCCATGGCGGCGAAGTAGATGGTCTCGAAGATGTTCTTGTTGAGCTCCCGGGC 31342 Query 148604 CGACTCGCTTTCGTACGGCATA-CGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGC 148662 | |||||| ||| || || || || | | ||||||||| || |||||||| |||| Sbjct 31341 CTTCTCGCTCTCGAAC-GCGTAGTTCATGAGGATAAACGCGTCCGCGAGGCCCTGGACGC 31283 Query 148663 CCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC---GGATAGT 148719 | | || ||||| ||||| |||||||| |||||| ||||| | || |||| Sbjct 31282 CAATACCGATGGGGCGGTGACGCATGTTGGACTTGCGCGC---CTCGATCACGGGGTAGT 31226 Query 148720 GGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCA 148779 |||| |||||||| ||||| | ||||| |||||||| || | || | | | Sbjct 31225 AGTTGACGTCGATGACCTTGTTTAAGTTGCGGGTGACCACCTTCGTCA--CTTCATACAA 31168 Query 148780 ATTCAAAATCGTACTTG---------TCATCTACGATGCATCGGTTCACGGCGATAGAGG 148830 ||| | ||| ||| || || |||| | | || || || | ||| | Sbjct 31167 CTTC----TGGTAGTTGAAAACTCCTTCCTCCACGA-ACTTAGG--CAGCGCCACAGACG 31115 Query 148831 CTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGAT 148890 | | |||||||| ||| ||| ||||| | ||||||| | | ||| ||| | | Sbjct 31114 CCAAGTTGCACACAGCCACCTCGTCCGGCGACGTGTACTCCATCACCTCACAGCATAAGT 31055 Query 148891 TGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGT 148950 ||||| | |||| ||| | |||||| || || ||||| |||| ||||||||||| Sbjct 31054 TGCTGGAGCGGATCGTGCCGAGGTTCTTCTGGTTCGACTTGCGGTTGGCCGCGTCCTTGT 30995 Query 148951 ACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAACCGATGCAGGT 149007 ||| ||| | || | || || || | ||| | |||| ||| ||||| ||| | Sbjct 30994 ACAACATAAAGGGCACTCCCGTCTCAATCTGGGCGTCCAATATGGCGAACC---ACAGCT 30938 Query 149008 CCTGCGCG-CGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCGC 149066 ||| ||| | | | ||| | ||| |||||| |||||| ||| || | Sbjct 30937 GCTGGGCGTTGATCGTCTTGC-GGGCGCGTCCCTCCGTCTCGTACTTTTCATAGAGGGCC 30879 Query 149067 TCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGAC 149126 ||||| | ||||| |||| || | ||| || ||| || || ||||| ||| | Sbjct 30878 TCGAATTCGTCGCCCCAGCACTCATAGAGTCCAGGGGCCTCGTTAGGGCAATAGAGACTC 30819 Query 149127 CACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATG 149186 ||| ||| | || | ||| | |||||| |||||||| |||||||| || ||||| | Sbjct 30818 CACTTGCCATTGGCTTCCACCCTCTTCATGAACAGATCAGGCACCCAAAGGGCGTAGAAC 30759 Query 149187 AGGTCGC--GCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGT-TGAGCACGCTG 149243 ||||||| |||| |||| ||| ||| ||| || |||| || || | | Sbjct 30758 AGGTCGCGAGCGCGGTGCA--ACTCGTTGCCGTGGTTCTTACGGAGGTCCAAGAACTC-G 30702 Query 149244 AATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTTG---CCG 149300 || | || |||||||| ||||| | || | |||| | |||||| |||||| ||| Sbjct 30701 AACACATCTGCGTGCCAAGGCTCCAAATAGATGGCGAAGGAGCCCTTACGCTTGCCTCCG 30642 Query 149301 CCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTG 149360 |||||||| |||| ||| | ||| ||||||||| || | ||| || |||||| || Sbjct 30641 CCCTGGTCCACGTACCGCGCGGTGTCGTTAAACACCCGCAGCATGGGGATGATGCCATTG 30582 Query 149361 GCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACG 149420 | | |||||| || | ||| ||| | ||||| | ||||||| ||| | Sbjct 30581 GACGAGCCGTTCGTGCCTCGGATGTAGCTGTTGGTGGCTCGGATGTTGTGCATACTGATG 30522 Query 149421 CCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCC 149480 || || || ||| | | || ||||| || || | | ||| ||| ||||| Sbjct 30521 CCAATACCTCCGGCCCATTTAGAGATACAGGCACATTGCTTTAACGTGTCGTAAATGCCT 30462 Query 149481 TCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTG 149540 || || |||| | ||||| || || ||||| || ||| ||| || ||||| Sbjct 30461 TCAATTGAGTCGTCTTGCATGGCCAATAGGAAGCAAGACGACAGTTGTGGGCGCGGCGTG 30402 Query 149541 CCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTAC 149600 ||||| || | || ||| |||| || || ||| | | || ||| | ||||||| Sbjct 30401 CCGGCGTTAAAAAGTGTCGGGGTGGCATGCGTGAAAAACATTTGCGACATAAGCTCGTAC 30342 Query 149601 GACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATA 149660 | ||| || || | |||| |||||||| | || |||||||| | ||| Sbjct 30341 GTCTCCAGGGCGGCCGCAATGTTGCTCTTGTGGATGCCAAGTGCCACGCGCATAATCATT 30282 Query 149661 TGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAA---GTAGCCGTTTTCTAGT 149717 |||||||| |||||| |||||||| || || | | || ||| ||| || || Sbjct 30281 TGCTGCGGACGCTCCACCACTTTG---CCGTTTACGCGGAAGAGGTACCCGCGCTCGAGA 30225 Query 149718 GTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGC 149767 || || | |||||||| | ||| |||||||| ||| ||||| ||||| Sbjct 30224 GTTTTAAACCCAAAGTAGTCGTAATCAAAGTCCCGGTCGTGGATGATGGC 30175 >seq784 Length=83642 Score = 152 bits (168), Expect = 5e-32 Identities = 154/198 (78%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| |||| || |||| ||| |||||| ||||||||||| Sbjct 18816 GTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACC-GTCCTCAAGCTGCTTGCC 18874 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || ||||||||||| || |||||||| |||||||| |||||| ||||| Sbjct 18875 AGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTT 18934 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | || ||| | ||||||||||| | |||| || ||||| ||||| || Sbjct 18935 GACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCCGTCAGCGT 18994 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 18995 CTTCACGAAGATCTGCAT 19012 >seq147 Length=128699 Score = 134 bits (148), Expect = 1e-26 Identities = 124/157 (79%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||||||||||||||| ||| | || || ||||||||||| || |||||||| ||||| Sbjct 64830 GTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTT 64889 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| ||| || ||||||| | |||| |||||| ||||||||||| | |||| Sbjct 64890 GTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCGGACGGCTCCACGTCCAGCGTGAT 64949 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 ||| ||||| ||||| || || || || ||||||||| Sbjct 64950 GGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 64986 >seq1029 Length=318196 Score = 111 bits (122), Expect = 2e-19 Identities = 426/656 (65%), Gaps = 21/656 (3%) Strand=Plus/Minus Query 120466 AGCAGTCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGC 120525 ||||| ||||| || || ||||| ||||| | ||||||| | || ||||||||| | | Sbjct 189582 AGCAGACGGTCGGCCACGAACTCGATGTATTGGCACATGAGCGCCGAGTTCATGCCGATC 189523 Query 120526 AACGCCACCGGCAACGCCG-ACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAA 120584 || |||| || | || ||| | ||||| | ||| || |||| | || | Sbjct 189522 GACTCCACAGGGAGCGAGTCACGC-ACGAACTCGTGCTCGATCGTCACCCCGTCGCGCAC 189464 Query 120585 CATGGCGAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACA---G 120641 || || ||| | || |||| ||||| | | | | || |||||| | Sbjct 189463 GATCTCGTGCACGCGGCTCCCCGGCAGCTTGTTCACCA-----GCTTGG-AGTACATGAG 189410 Query 120642 GCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAG 120701 |||||| ||||||||||||| ||||||||| || ||||||||||| || |||| Sbjct 189409 GCACGCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAG 189350 Query 120702 GCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAA 120761 ||| ||| ||| ||| | |||||| |||| || | | || |||||| ||||| Sbjct 189349 GCCAGGCGTGAGGCCGCGCTTCTTGAGCCAGAAGATCGAGCAGAACGAGCCCGAGAAGAA 189290 Query 120762 CACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGC-TGT 120820 | |||||||||| | || || | | || |||||| | ||| || | || || || Sbjct 189289 GATGCCCTCCACGGTTGCGAACGTCAGCACGCGCTCCGGGTACGACGAC-ACTCGCGGGT 189231 Query 120821 CGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGT 120880 || |||||| | ||||| | || || || ||| ||||| ||| |||| || Sbjct 189230 CGCACCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGAATCGTATCGATGGCAC 189171 Query 120881 TCAGCAGCATGTCGCGCTCGCCCTCCTCCGCAATCAGCTGATGGATGAGCAGATTGTACA 120940 |||||| ||| ||| | | ||| || | | |||||||| |||| Sbjct 189170 GCAGCAGGTGGTCCTTCTCCGTCGCATCCTTGATGTACGTGTCAATGAGCAGCGAATACA 189111 Query 120941 TTTCCGTGTGCACGCACTCGATCAGCACTTGCTGG---TTGTAAAAGTACTGCGCCTCCA 120997 || | ||| | | |||||| || | |||| ||| ||| | | |||||| Sbjct 189110 CCTCTGAGTGGATGTTCTCGAT-GGCGAT--CTGGAAACCGTAGAAGCAGCGGGCCTCCG 189054 Query 120998 GCTCGGGCACCGC-CCGCTGCATGTACTCGATAAGGTTAATATTCACGATACTGTCGGCG 121056 | | |||| | |||| | || | | ||||| |||||||| | |||| | Sbjct 189053 GTACCTGCACTTCATTGCTG-AAGTTCATGGCCAGGTTCTCGTTCACGATGCCGTCGCTG 188995 Query 121057 GCGGCGAAGAACGCCAGCACGTGCTTGATAAAGTGTCGCTCGTCGTCCGTGAGCTT 121112 || |||||||| ||||||||||||||||| ||| ||||||| |||||| || || Sbjct 188994 GCAGCGAAGAAGGCCAGCACGTGCTTGATGAAGAACCGCTCGTTGTCCGTCAGGTT 188939 Score = 82.4 bits (90), Expect = 7e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 120354 GTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCAT 120413 ||||||||| ||||||||||| |||||||| || ||||||| || ||| || ||| ||| Sbjct 194117 GTACTCGCCCACGCGTTTCTCGAAAAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCAT 194058 Query 120414 AAACTCGAACGGGTTGCTCGCGT 120436 | ||||||||||| |||||| Sbjct 194057 CCAATCGAACGGGTTCTTCGCGT 194035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483411034899840