Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq926 96.9 3e-15 seq784 91.5 1e-13 >seq926 Length=67561 Score = 96.9 bits (106), Expect = 3e-15 Identities = 404/626 (65%), Gaps = 15/626 (2%) Strand=Plus/Minus Query 147792 CATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCG--CGCTTTGCAATCCTCG 147849 ||| |||||||| |||||||| || ||||| | || ||||| ||| ||||| |||| Sbjct 30792 CATGAACAGATCAGGCACCCAAAGGGCGTAGAACAGGTCGCGAGCGCGGTGCAA--CTCG 30735 Query 147850 GCGCCCATGTTGCGTTTCAAATT--AAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAA 147907 ||| ||| | | | | ||| || | | | | || |||||||| || || | Sbjct 30734 TTGCCGTGGTT-CTTACGGAGGTCCAAGAACTCGA-ACACATCTGCGTGCCAAGGCTCCA 30677 Query 147908 TGTAGACGGCCAGCGCACCTTTACGCTT---TCCGCCCTGGTCGACATGGCGCACCATGT 147964 |||| ||| | | || |||||||| |||||||||||| || | ||| | ||| Sbjct 30676 AATAGATGGCGAAGGAGCCCTTACGCTTGCCTCCGCCCTGGTCCACGTACCGCGCGGTGT 30617 Query 147965 TGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCT 148024 ||||||||| |||| |||||| | ||| | | | |||||| ||| ||| | Sbjct 30616 CGTTAAACACCCGCAGCATGGGGATGATGCCATTGGACGAGCCGTTCGTGCCTCGGATGT 30557 Query 148025 TGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATA 148084 |||| | |||||| | | ||||| | | |||||| || ||| | | || || | Sbjct 30556 AGCTGTTGGTGGCTCGGATGTTGTGCATACTGATGCCAATACCTCCGGCCCATTTAGAGA 30497 Query 148085 TGGCAGCGCA-ATCGC-CCAATGTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCC 148142 | ||| ||| || || || || ||| ||||| || || ||||| || | | | Sbjct 30496 T-ACAG-GCACATTGCTTTAACGTGTCGTAAATGCCTTCAATTGAGTCGTCTTGCATGGC 30439 Query 148143 AAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACT 148202 | | || || || ||| ||| || | |||| || || ||||| || || | Sbjct 30438 CAATAGGAAGCAAGACGACAGTTGTGGGCGCGGCGTGCCGGCGTTAAAAAGTGTCGGGGT 30379 Query 148203 CGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTC 148262 || ||||| || || |||| ||| | |||||||| | ||| | | |||| Sbjct 30378 GGCATGCGTGAAAAACATTTGCGACATAAGCTCGTACGTCTCCAGGGCGGCCGCAATGTT 30319 Query 148263 GTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTCGGCAACTTG 148322 | ||| ||||| || || |||||||| | ||| ||||| || || || | |||| Sbjct 30318 GCTCTTGTGGATGCCAAGTGCCACGCGCATAATCATTTGCTGCGGACGCTCCACCACTTT 30259 Query 148323 ATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATC 148382 ||| | || || || || ||||| ||||| | |||||||| | |||||| Sbjct 30258 GCCGTTTACGCGGAAGAGGTACCCGCGCTCGAGAGTTTTAAACCCAAAGTAGTCGTAATC 30199 Query 148383 AAAATCTAGCTCGTAAGCGATGGCCG 148408 ||| || | |||| |||||||| Sbjct 30198 AAAGTCCCGGTCGTGGATGATGGCCG 30173 >seq784 Length=83642 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/227 (69%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||||| |||| || | | ||||| || ||||||||||||||||||| || Sbjct 18791 ACGAAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGT 18850 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || || ||||| || || | |||| |||||||| || || || || ||||| Sbjct 18851 GCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCC 18910 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || || | | || | | || | ||||||||| || | Sbjct 18911 CTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAG 18970 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACTT 132128 ||| | ||| || || ||||| || || | ||| |||||||| |||| Sbjct 18971 CGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT-ACTT 19016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476601572453760