Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq191 82.4 6e-11 >seq191 Length=126180 Score = 82.4 bits (90), Expect = 6e-11 Identities = 209/312 (67%), Gaps = 11/312 (4%) Strand=Plus/Minus Query 40986 AAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACAT 41045 |||||||| |||| ||| || || | ||| |||||||| || |||| | || Sbjct 33532 AAATCCGA--CCGA---CCGTCGGATCGTGCTGTCGGCGTGGAATCCGGCGGATCTCAAT 33478 Query 41046 TTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTG 41105 |||||| | || || ||||| |||| || ||||| ||||| | | || || || Sbjct 33477 GAGATGGCGCTCCCGCCGTGTCACATGTTCTGCCAGTTCTACGTGGCCGACGGCGAGTTG 33418 Query 41106 TCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCG 41165 || || || |||| || | || | ||||||||||| || || ||||| ||||| || Sbjct 33417 TCCTGCCAGATGTACCAGCGCTCGGCCGACATGGGACTTGGCGTGCCGTTCAACATCGCC 33358 Query 41166 AGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTT 41225 || || || |||| ||| |||| ||||| || | | || ||||| || ||| Sbjct 33357 AGCTACGCGTTGCTTACGCGACTGATAGCACAGGTGAGTGGACTGAAGCCTGGCGAGTTT 33298 Query 41226 GTTCACACGTTA--GGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAA- 41282 || ||||||| || |||| || | || |||| || | |||||| | ||||| Sbjct 33297 GT--CCACGTTATTGGTGATGCCCACGTGTATCTTAACCATGTCGAGCCGCT-CCAGAAG 33241 Query 41283 CAACTGACACGA 41294 || || || ||| Sbjct 33240 CAGCTTACTCGA 33229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397448172104080