Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq952 98.7 1e-15 seq1029 87.8 2e-12 >seq952 Length=187182 Score = 98.7 bits (108), Expect = 1e-15 Identities = 241/359 (67%), Gaps = 10/359 (3%) Strand=Plus/Plus Query 181624 AACCCGTACCGATACCCTCGGTTCCATTCACGAGAACCATTGGTAAAGTTGGCATGTAAA 181683 ||||||| |||||||| ||| | || || || || |||||||| | | | || || || Sbjct 135637 AACCCGTTCCGATACCGTCGCTGCCGTTGACAAGTACCATTGGGATAATCGGGATATACC 135696 Query 181684 AGTCTGGTTCAATGGAGCGTCCATCATCGTCCAAGTAGTTGAGGATCGGGTCATCCCGAG 181743 | || || ||||| || | || || ||||||||||| | ||| | | || ||| Sbjct 135697 ATTCCGGCTCAATTGATTGACCGTCTTCGTCCAAGTATTCGAGCACATCATTGTCAAGAG 135756 Query 181744 GATCAAAGATCTTGCGAGCCTCCTTGGT--AAGTTTTGTGAAGATATACCTCGTTTGAGA 181801 ||||| ||||| ||||| ||| | ||| || ||||| ||||| | | | Sbjct 135757 GATCATAGATCCGGCGAG-TGAGTTGTTCCAAG-TTCGTGAAAATATAACGAGCGCTGGC 135814 Query 181802 AGCGTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAAT 181861 || || || || ||||| | ||||||||| || ||||| |||| || |||| || Sbjct 135815 TGCATCCTTGCCGCCCATCAAACGCGTACCGAACTGACCGATTGGCGACAGGAGGTGGAT 135874 Query 181862 GTTGTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCC-GCAAGGGACACT- 181919 |||||| || | |||| | |||| || ||||| || |||| || || Sbjct 135875 GTTGTTGCTTCCGACAAAGTCCTGAGCCATGTTGACGATACAGCCCTGCAA---ACTCTG 135931 Query 181920 -TCACCGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCA 181977 || ||||| ||||| || || | || | ||||| | ||||| ||||||||||||| Sbjct 135932 CTCGCCGTGATGGTACGCGGAGTGCTCTGACACATAACCAGCCAATTGTGCCACCTTCA 135990 >seq1029 Length=318196 Score = 87.8 bits (96), Expect = 2e-12 Identities = 190/282 (67%), Gaps = 2/282 (1%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 || || ||| ||| | ||||| || ||| || || || || ||||||| || || Sbjct 189405 GCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCA 189346 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||| |||| || |||||||| | ||| | || | |||||| || || ||||||||||| Sbjct 189345 GGCGTGAGGCCGCGCTTCTTGAGCCAGAAGATCGAGCAGAACGAGCCCGAGAAGAAGATG 189286 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACT-TTGCATCAAA 122837 |||||||| || |||| | | ||| || | | | || ||| ||| | || | Sbjct 189285 CCCTCCACGGTTGCGAACGTCAGCACGCGCTCCGGGTACGA-CGACACTCGCGGGTCGCA 189227 Query 122838 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 122897 ||| || | ||||| | ||| ||||||| | ||| || | || | |||||| | Sbjct 189226 CCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGAATCGTATCGATGGCACGCAG 189167 Query 122898 TAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAAT 122939 | || | ||| || | ||||||| ||||| ||||||| Sbjct 189166 CAGGTGGTCCTTCTCCGTCGCATCCTTGATGTACGTGTCAAT 189125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628019313753600