Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1029 125 9e-24 >seq1029 Length=318196 Score = 125 bits (138), Expect = 9e-24 Identities = 315/470 (67%), Gaps = 18/470 (4%) Strand=Plus/Minus Query 129839 AGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGAT- 129897 || ||||| || | ||| |||| ||||| | |||| | | |||||||| ||||| Sbjct 189582 AGCAGACGGTCGGCCACGAACTCGATGTATTGGCACATGAGCGCCGAGTTCATGCCGATC 189523 Query 129898 GAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCAC 129957 || ||| ||||||| ||| | |||| | | ||| || ||| | || ||||| Sbjct 189522 GACTCCACA-GGGAGCGAGTCACGCACGAACTCGTGCTCGATCGTCACCCCGTCGCGCAC 189464 Query 129958 GATGGCGTGAATG-GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC----- 130011 ||| |||| | | | |||| | ||| | || || |||| |||| | Sbjct 189463 GATCTCGTGCACGCGGCTCCCCGGCAGCT----TGTTCACCAGCTTG--GAGTACATGAG 189410 Query 130012 -CACGGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACA 130070 |||| | || ||| ||| | |||||||||||| ||| || || |||||||||| || Sbjct 189409 GCACG-CGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCA 189351 Query 130071 GACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGA 130130 | || ||| |||| || |||||||| | |||||| |||| || || ||||| ||||||| Sbjct 189350 GGCCAGGCGTGAGGCCGCGCTTCTTGAGCCAGAAGATCGAGCAGAACGAGCCCGAGAAGA 189291 Query 130131 AGATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACT-TTGTA 130189 |||| |||||||| ||||||| | | ||||| | | || || ||| | Sbjct 189290 AGATGCCCTCCACGGTTGCGAACGTCAGCACGCGCTCCGGGTACGA-CGACACTCGCGGG 189232 Query 130190 TCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCT 130249 || ||||||| | |||||| ||||| || |||| | |||||| | || | ||| || Sbjct 189231 TCGCACCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGAATCGTATCGATGGCA 189172 Query 130250 TCAAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 130299 | || | | ||| || | | ||| ||||||||| | || ||||| Sbjct 189171 CGCAGCAGGTGGTCCTTCTCCGTCGCATCCTTGATGTACGTGTCAATGAG 189122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618422707608960