Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq926 172 6e-38 seq1029 120 4e-22 >seq926 Length=67561 Score = 172 bits (190), Expect = 6e-38 Identities = 425/634 (67%), Gaps = 17/634 (3%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| | ||| | ||||||||||| | || || || | |||||| | | | Sbjct 30274 CCGCAGCAAATGATTATGCGCGTGGCACTTGGCATCCACAAGAGCAACATTGCGGCCGCC 30333 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCA----ACACCAACCCT 104337 ||||||| ||||| ||||| ||| ||||| |||||||| || || || || Sbjct 30334 CTGGAGACGTACGAGCTTATGTCGCAA---ATGTTT-TTCACGCATGCCACCCCGACACT 30389 Query 104338 CTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGA 104397 || || || || || || | || ||| |||| ||||||||| | |||| | || Sbjct 30390 TTTTAACGCCGGCACGCCGCGCCCACAACTGTCGTCTTGCTTCCTATTGGCCATGCAAGA 30449 Query 104398 GGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGC 104457 |||||||| | || || || | || | | | | ||||| ||||| || ||||| Sbjct 30450 CGACTCAATTGAAGGCATTTACGACACGTTAAAGCAATGTGCCTGTATCTCTAAATGGGC 30509 Query 104458 TGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGA 104516 || |||||||| || || || | | |||||| || | || || || || | Sbjct 30510 CGGAGGTATTGGCATCAGTATGCACAACATCCGAGCCACCAACAGCTAC-ATCCGAGGCA 30568 Query 104517 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 104576 | || || || |||| || || || ||||| || || ||||||| ||| ||||| | Sbjct 30569 CGAACGGCTCGTCCAATGGCATCATCCCCATGCTGCGGGTGTTTAACGACACCGCGCGGT 30628 Query 104577 ATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 | || | || | || | || ||||| || |||| ||||| | ||||| |||| Sbjct 30629 ACGTGGACCAGGGCGGAGGCAAGCGTAAGGGCTCCTTCGCCATCTATTTGGAGCCTTGGC 30688 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 |||| ||| | | |||||| | || | ||| ||||| || ||||| | | | | Sbjct 30689 ACGCAGATGTGTTCGAGTTCTTGGACCTCCGTAAGAACCACGGCAACGAGTTG-CACCGC 30747 Query 104694 GC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752 || ||||| || |||| ||| || ||| | || ||||| ||||||||||| || || | Sbjct 30748 GCTCGCGACCTGTTCTACGCCCTTTGGGTGCCTGATCTGTTCATGAAGAGGGTGGAAGCC 30807 Query 104753 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGG 104811 | |||||| ||| ||||| ||| || || |||| ||||| |||| || ||| | ||| Sbjct 30808 AATGGCAAGTGGAGTCTCTATTGCCCTAACGAGGCCCCTGGACTCTATGAGTGCTG-GGG 30866 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAG 104845 || || || || ||||| || |||||||||| Sbjct 30867 CGACGAATTCGAGGCCCTCTATGAAAAGTACGAG 30900 >seq1029 Length=318196 Score = 120 bits (132), Expect = 4e-22 Identities = 190/270 (70%), Gaps = 8/270 (3%) Strand=Plus/Plus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 94731 ||||| |||| ||| || ||||||| | |||||| | || || | |||||| | Sbjct 189122 CTCATTGACACGTACATCAAGGATGCGACGGAGAAGGACCACCTGCTGCGTGCCATCGAT 189181 Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATAC---AAAG 94788 || |||||||| | | ||||||||| | ||||| | ||||||| || | | | Sbjct 189182 ACGATTCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGAGTG 189241 Query 94789 TCG-CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 94847 ||| ||| || | ||||| | | | || || || ||||| ||||||||||| Sbjct 189242 TCGTCGTACC----CGGAGCGCGTGCTGACGTTCGCAACCGTGGAGGGCATCTTCTTCTC 189297 Query 94848 TGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 94907 || || |||||| | || | |||||||||||||| || |||| ||| || || |||| Sbjct 189298 GGGCTCGTTCTGCTCGATCTTCTGGCTCAAGAAGCGCGGCCTCACGCCTGGCCTGAGCTT 189357 Query 94908 CTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 ||| |||||||| ||| ||||||||||| Sbjct 189358 CTCGAACGAGCTGATCAGCCGTGACGAGGG 189387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583249018131840